| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1939382 | 96 (0.980) | 8 (0.090) | 7/142 | NT | 9.0% | intergenic (‑241/+122) | hsdM_2/splF | Type I restriction enzyme EcoKI M protein/Serine protease SplF |
| ? | USA300TCH1516_ALE | = 1939405 | 77 (0.880) | intergenic (‑264/+99) | hsdM_2/splF | Type I restriction enzyme EcoKI M protein/Serine protease SplF | |||||
TTTATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1939284‑1939382‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaatcaacGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATATAAATGATTTTG < USA300TCH1516_ALE/1939405‑1939316 TTTATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAAC > 1:2424282/1‑91TTTATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAAC > 1:1978549/1‑91 TTATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACC > 1:2540535/1‑91 TTATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACC > 1:2222716/1‑91 TATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCCTAATGATGTCAAAAAGTTGTTCATTCATAGATAAATAAAACCA > 1:4146579/1‑91 ATAGAAGTGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAATGTTGTGCATTGATGCATAAGTAACACCAA > 1:1304351/1‑91 ATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAA < 1:1120733/91‑1 ATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAA < 1:229886/91‑1 ATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAA < 1:2166392/91‑1 ATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAA < 1:2812749/91‑1 ATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAA > 1:626006/1‑91 ATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAA > 1:831870/1‑91 TAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAAT > 1:2227382/1‑91 TAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTCGTTCATTCATACATAAATAAAACCAAT > 1:2623320/1‑91 AGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATC > 1:54415/1‑91 AGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATC > 1:817890/1‑91 GAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCA > 1:1856902/1‑91 AAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAA < 1:1692337/91‑1 AATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAAC < 1:2678960/91‑1 AGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACGATTGAgt > 1:2068177/1‑89 CTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACGATTGATTTTCACCAACTCA < 1:961605/91‑1 AAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACGATTGATTTTCACCAACTCAATTGT < 1:1742000/91‑1 AAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACGATTGATTTTCACCAACTCAATTGTT < 1:2057875/91‑1 TCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAGCCAATCAACGATTGATTTTCACCAACTCAATTGTTGAT < 1:1131816/91‑1 TCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACGATTGATTTTCACCAACTCAATTGTTGAT < 1:2279718/91‑1 TTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGT < 1:2971946/91‑1 TTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAGCCAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTA < 1:958158/91‑1 CCAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATATAAA > 1:2508896/1‑91 CCAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATATAAA < 1:585934/91‑1 CAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATATAAAT > 1:2427627/1‑91 CAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATATAAAT > 1:914836/1‑91 CAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATATAAAT > 1:3607750/1‑91 AATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATATAAATG > 1:2109686/1‑91 TCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATATAAATGAT < 1:177135/91‑1 CAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATATAAATGATT > 1:2832257/1‑91 CAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATATAAATGATT < 1:1068147/91‑1 AACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATATAAATGATTT > 1:138328/1‑91 AACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATATAAATGATTT > 1:1318447/1‑91 CGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATATAAATGATTTTG < 1:1510195/91‑1 CGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATATAAATGATTTTG < 1:235944/91‑1 TTTATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1939284‑1939382‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaatcaacGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATATAAATGATTTTG < USA300TCH1516_ALE/1939405‑1939316 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |