BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1939382	96 (0.980)	8 (0.090)	7/142	NT	9.0%	intergenic (‑241/+122)	hsdM_2/splF	Type I restriction enzyme EcoKI M protein/Serine protease SplF
*	?	USA300TCH1516_ALE	= 1939405	77 (0.880)	8 (0.090)	7/142	NT	9.0%	intergenic (‑264/+99)	hsdM_2/splF	Type I restriction enzyme EcoKI M protein/Serine protease SplF

Only 100 of 121 total aligned reads displayed.

CAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCT  >  USA300TCH1516_ALE/1939316‑1939494

cAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCg                                                                                          <  1:235944‑M2/91‑2 (MQ=255)

cAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCg                                                                                          <  1:1510195‑M2/91‑2 (MQ=255)

  aaaTCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCgtt                                                                                        >  1:1318447‑M2/1‑88 (MQ=255)

   aaTCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCgttg                                                                                       <  1:1068147‑M2/91‑5 (MQ=255)

   aaTCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCgttg                                                                                       >  1:2832257‑M2/1‑87 (MQ=255)

      cATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCgttgatt                                                                                    >  1:2109686‑M2/1‑84 (MQ=255)

       aTTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCgttgattg                                                                                   >  1:3607750‑M2/1‑83 (MQ=255)

       aTTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCgttgattg                                                                                   >  1:2427627‑M2/1‑83 (MQ=255)

        tttATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCgttgattgg                                                                                  <  1:585934‑M2/91‑10 (MQ=255)

         ttATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGc                                                                                 <  1:649412/91‑1 (MQ=255)

          tataTTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCt                                                                                >  1:1196209/1‑91 (MQ=255)

          tataTTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCt                                                                                <  1:2262967/91‑1 (MQ=255)

          tataTTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCt                                                                                <  1:109276/91‑1 (MQ=255)

           atatTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCtt                                                                               >  1:3158890/1‑91 (MQ=255)

           atatTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCtt                                                                               >  1:3161786/1‑91 (MQ=255)

           atatTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCtt                                                                               >  1:1967299/1‑91 (MQ=255)

            tatTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCttt                                                                              <  1:9253/91‑1 (MQ=255)

             atTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTg                                                                             <  1:466490/91‑1 (MQ=255)

             atTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTg                                                                             <  1:466101/91‑1 (MQ=255)

             atTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTg                                                                             <  1:3873867/91‑1 (MQ=255)

             atTCTTAATGATGTCAAAAAGTTGTACATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTg                                                                             <  1:3869530/91‑1 (MQ=255)

                cTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATg                                                                          <  1:1350491/91‑1 (MQ=255)

                cTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATg                                                                          <  1:1350577/91‑1 (MQ=255)

                    atgatgTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCata                                                                      <  1:1478793/91‑1 (MQ=255)

                    atgatgTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCata                                                                      >  1:1908137/1‑91 (MQ=255)

                    atgatgTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCata                                                                      <  1:86283/91‑1 (MQ=255)

                     tgatgTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCatat                                                                     <  1:3708315/91‑1 (MQ=255)

                     tgatgTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCatat                                                                     <  1:2035414/91‑1 (MQ=255)

                     tgatgTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCatat                                                                     <  1:521111/91‑1 (MQ=255)

                        tgTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTaa                                                                  >  1:1238808/1‑91 (MQ=255)

                           cAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAaata                                                               >  1:4102338/1‑91 (MQ=255)

                            aaaaaGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAaataa                                                              >  1:3902147/1‑91 (MQ=255)

                               aaGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGc                                                           <  1:564856/91‑1 (MQ=255)

                                aGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCa                                                          >  1:3684790/1‑91 (MQ=255)

                                  ttgttCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAat                                                        <  1:1787894/91‑1 (MQ=255)

                                  ttgttCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAat                                                        <  1:1787561/91‑1 (MQ=255)

                                   tgttCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAata                                                       >  1:1948817/1‑91 (MQ=255)

                                     ttcaatcaTACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAataca                                                     >  1:3268359/1‑89 (MQ=255)

                                      tcattcatACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAatatat                                                    <  1:250846/91‑1 (MQ=255)

                                      tcattcatACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAatatat                                                    >  1:2606391/1‑91 (MQ=255)

                                      tcattcatACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAatatat                                                    <  1:2044000/91‑1 (MQ=255)

                                       cattcatACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAatatata                                                   >  1:2456054/1‑91 (MQ=255)

                                       cattcatACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAatatata                                                   >  1:1165124/1‑91 (MQ=255)

                                           catacataAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATtaa                                               <  1:1381590/91‑1 (MQ=255)

                                           catacataAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATtaa                                               >  1:3149786/1‑91 (MQ=255)

                                            atacataAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATtaat                                              <  1:612828/91‑1 (MQ=255)

                                             tacataAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATtaata                                             <  1:1894302/91‑1 (MQ=255)

                                             tacataAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATtaata                                             <  1:2488760/91‑1 (MQ=255)

                                              acataAACAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATtaataa                                            <  1:2064825/91‑1 (MQ=255)

                                                 taaataaaACCAATCAACAATTGAGTTGGTGAAAATCAATCgttgattggctttatttatgtatgaatgaacaactttttgacatcattaa                                         <  1:958158‑M2/91‑51 (MQ=255)

                                                 taaataaaACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATg                                         <  1:3054085/91‑1 (MQ=255)

                                                 taaataaaACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATg                                         <  1:3053596/91‑1 (MQ=255)

                                                 taaataaaACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATg                                         <  1:3949807/91‑1 (MQ=255)

                                                 taaataaaACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATg                                         >  1:3877766/1‑91 (MQ=255)

                                                 taaataaaACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATg                                         <  1:3053479/91‑1 (MQ=255)

                                                  aaataaaACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATgt                                        <  1:2624001/91‑1 (MQ=255)

                                                   aataaaACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATgtt                                       >  1:2161997/1‑91 (MQ=255)

                                                     taaaACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATgttag                                     >  1:2314313/1‑91 (MQ=255)

                                                     taaaACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATgttag                                     <  1:4086384/91‑1 (MQ=255)

                                                     taaaACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATgttag                                     >  1:961140/1‑91 (MQ=255)

                                                      aaaaCCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATgttagt                                    >  1:3801663/1‑91 (MQ=255)

                                                      aaaaCCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATgttagt                                    >  1:1854281/1‑91 (MQ=255)

                                                        aaCCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATgttagtta                                  <  1:18126/91‑1 (MQ=255)

                                                        aaCCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATgttagtta                                  <  1:1786166/91‑1 (MQ=255)

                                                         aCCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTtat                                 >  1:1019245/1‑91 (MQ=255)

                                                         aCCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTtat                                 >  1:198995/1‑91 (MQ=255)

                                                           cAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAg                               >  1:2434138/1‑91 (MQ=255)

                                                            aaTCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGt                              <  1:1335516/91‑1 (MQ=255)

                                                            aaTCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGt                              <  1:3169572/91‑1 (MQ=255)

                                                             aTCAACAATTGAGTTGGTGAAAATCAATCgttgattggttttatttatgtatgaatgaacaactttttgacatcattaagaatataaatga                             <  1:2279718‑M2/91‑63 (MQ=255)

                                                             aTCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGta                             <  1:1696983/91‑1 (MQ=255)

                                                              tCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGtat                            >  1:4145910/1‑91 (MQ=255)

                                                               caacaaTTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGtata                           <  1:660694/91‑1 (MQ=255)

                                                                aacaaTTGAGTTGGTGAAAATCAATCgttgattggttttatttatgtatgaatgaacaactttttgacatcattaagaatataaatgattt                          <  1:2057875‑M2/91‑66 (MQ=255)

                                                                aacaaTTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTatat                          >  1:6292/1‑91 (MQ=255)

                                                                 acaaTTGAGTTGGTGAAAATCAATCgttgattggttttatttatgtatgaatgaacaactttttgacatcattaagaatataaatgatttt                         <  1:1742000‑M2/91‑67 (MQ=255)

                                                                 acaaTTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATAtt                         <  1:285790/91‑1 (MQ=255)

                                                                 acaaTTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATAtt                         <  1:285741/91‑1 (MQ=255)

                                                                    aTTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTg                      >  1:1654532/1‑91 (MQ=255)

                                                                     ttGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGt                     <  1:3941014/91‑1 (MQ=255)

                                                                     ttGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGt                     <  1:2681976/91‑1 (MQ=255)

                                                                     ttGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGt                     >  1:501813/1‑91 (MQ=255)

                                                                     ttGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATACATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGt                     >  1:3497182/1‑91 (MQ=255)

                                                                      tGAGTTGGTGAAAATCAATCgttgattggttttatttatgtatgaatgaacaactttttgacatcattaagaatataaatgattttgaaag                    <  1:961605‑M2/91‑72 (MQ=255)

                                                                         gTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAgg                 >  1:2148605/1‑91 (MQ=255)

                                                                          ttGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGa                >  1:2441951/1‑91 (MQ=255)

                                                                           tGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGAt               <  1:255189/91‑1 (MQ=255)

                                                                           gggTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGAt               <  1:2803583/90‑1 (MQ=255)

                                                                                aaaaTCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGt          >  1:3045054/1‑91 (MQ=255)

                                                                                 aaaTCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTg         >  1:1306513/1‑91 (MQ=255)

                                                                                 aaaTCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTg         >  1:1117571/1‑91 (MQ=255)

                                                                                  aatcaatcGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGa        >  1:789981/1‑91 (MQ=255)

                                                                                   atcaatcGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGaa       >  1:1068730/1‑91 (MQ=255)

                                                                                    tcaatcGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAAt      <  1:3473748/91‑1 (MQ=255)

                                                                                     caatcGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATg     <  1:1339091/91‑1 (MQ=255)

                                                                                      aatcGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGt    <  1:254438/91‑1 (MQ=255)

                                                                                      aatcGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGt    <  1:2473676/91‑1 (MQ=255)

                                                                                       atcGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTc   <  1:690117/91‑1 (MQ=255)

                                                                                       atcGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTc   <  1:689894/91‑1 (MQ=255)

                                                                                        tcGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCt  <  1:2804875/91‑1 (MQ=255)

CAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCT  >  USA300TCH1516_ALE/1939316‑1939494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.