| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1946068 = | 128 (1.300) | 11 (0.130) | 8/142 | NT | 9.8% | intergenic (+119/+355) | USA300HOU_RS09665/USA300HOU_RS15380 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1946105 = | 88 (1.010) | intergenic (+156/+318) | USA300HOU_RS09665/USA300HOU_RS15380 | hypothetical protein/hypothetical protein | |||||
GACGACATGCGCGAACATGTCGTCTAAGCAAGCCAAACGCTGGCTTCTAAAATATTTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAATGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1946165‑1946068‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaatggttAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATATAATAACACGCA > USA300TCH1516_ALE/1946105‑1946194 GACGACATGCGCGAACATGTCGTCTAAGCAAGCCAAACGCTGGCTTCTAAAATATTTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGG < 1:189567/91‑1GACGACATGCGCGAACAGGTCGTCTAAGCAAGCCAAACGCTGGCTTCTAAAATATTTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGG < 1:3555333/91‑1GACGACATGCGCGAACAGGTCGTCTAAGCAAGCCAAACGCTGGCTTCTAAAATATTTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGG < 1:3556451/91‑1 ACGACATGCGCGAACATGTCGTCTAAGCAAGCCAAACGCTGGCTTCTAAAATATTTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGGA > 1:2841485/1‑91 CGACATGCGCGAACATGTCGTCTAAGCAAGCCAAACGCTGGCTTCTAAAATATTTTTTTAACCATTCCAACTTGCCAAAGTTTATGCGGAA > 1:63493/1‑91 CGACATGCGCGAACATGTCGTCTAAGCAAGCCAAACGCTGGCTTCTAAAATATTTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAA < 1:897446/91‑1 CGACATGCGCGAACATGTCGTCTAAGCAAGCCAAACGCTGGCTTCTAAAATATTTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAA < 1:2959085/91‑1 CGACATGCGCGAACATGTCGTCTAAGCAAGCCAAACGCTGGCTTCTAAAATATTTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAA > 1:1973468/1‑91 CGACATGCGCGAACATGTCGTCTAAGCAAGCCAAACGCTGGCTTCTAAAATATTTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAA > 1:3640665/1‑91 CGACATGCGCGAACATGTCGTCTAAGCAAGCCAAACGCTGGCTTCTAAAATATCTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAA < 1:3517107/91‑1 ACATGCGCGAACATGTCGTCTAAGCAAGCCAAACGCTGGCTTCTAAAATATTTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAATG > 1:301013/1‑91 ACATGCGCGAACATGTCGTCTAAGCAAGCCAAACGCTGGCTTCTAAAATATTTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAATG > 1:300548/1‑91 ACATGCGCGAACATGTCGTCTAAGCAAGCCAAACGCTGGCTTCTAAAATATTTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAATG > 1:3788411/1‑91 ACATGCGCGAACATGTCGTCTAAGCAAGCCAAACGCTGGCTTCTAAAATATTTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAATG > 1:3788410/1‑91 ACATGCGCGAACATGTCGTCTAAGCAAGCCAAACGCTGGCTTCTAAAATATTTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAATG > 1:2619311/1‑91 ATGCGCGAACATGTCGTCTAAGCAAGCCAAACGCTGGCTTCTAAAATATTTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAATGGT < 1:1401814/91‑1 ATGCGCGAACATGTCGTCTAAGCAAGCCAAACGCTGGCTTCTAAAATATTTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAATGGT < 1:1402118/91‑1 ATGCGCGAACATGTCGTCTAAGCAAGCAAAACGCTGGCTTCTAAAATATTTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAATGGT > 1:187331/1‑91 TGCGCGAACATGTCGTCTAAGCAAGCCAAACGCTGGCTTCTAAAATATTTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAATGGTT > 1:889137/1‑91 ATATTTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAATGGTTTAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACA > 1:3120311/1‑91 TTTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTC > 1:843688/1‑91 TTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCG > 1:3090944/1‑91 TTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCG > 1:3090806/1‑91 TTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCG > 1:2246465/1‑91 CATTCCAACTTGCCAAAGTTAATGCGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCACATGT > 1:2138207/1‑91 ATTCCAACTTGCCAAAGTTAATGCGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTC > 1:1573982/1‑91 ATTCCAACTTGCCAAAGTTAATGCGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTC > 1:475839/1‑91 CCAACTTGCCAAAGTTAATGCGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTC > 1:3094359/1‑91 AACTTGCCAAAGTTAATGCGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTT > 1:910956/1‑91 AAAGTTAATGCGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTAC > 1:3624360/1‑91 GGAATGGTTAGAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATATAAT > 1:814036/1‑91 AATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATATAATAA < 1:214061/91‑1 AATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATATAATAA < 1:1057718/91‑1 ATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATATAATAAC < 1:3076272/91‑1 ATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATATAATAAC > 1:1468443/1‑91 TGGTTAAAAAAATCTTTTAGAAGCCAGCGTTTGGCTTGCTTAGTCGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATATAATAACA < 1:4141007/91‑1 GGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATATAATAACAC < 1:343109/91‑1 GGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATATAATAACAC > 1:1772665/1‑91 GTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATATAATAACACG < 1:2213042/91‑1 GTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATATAATAACACG > 1:638123/1‑91 TTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATATAATAACACGC > 1:1564187/1‑91 TAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATTTAATAACACGCA < 1:3186208/91‑1 TAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATGTAATAACACGCA < 1:3186319/91‑1 GACGACATGCGCGAACATGTCGTCTAAGCAAGCCAAACGCTGGCTTCTAAAATATTTTTTTAACCATTCCAACTTGCCAAAGTTAATGCGGAATGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1946165‑1946068‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaatggttAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATATAATAACACGCA > USA300TCH1516_ALE/1946105‑1946194 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |