BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1946068 =	128 (1.300)	11 (0.130)	8/142	NT	9.8%	intergenic (+119/+355)	USA300HOU_RS09665/USA300HOU_RS15380	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1946105 =	88 (1.010)	11 (0.130)	8/142	NT	9.8%	intergenic (+156/+318)	USA300HOU_RS09665/USA300HOU_RS15380	hypothetical protein/hypothetical protein

Only 100 of 169 total aligned reads displayed.

AAAACATTAATAACTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCA  >  USA300TCH1516_ALE/1945978‑1946158

tgcgtgttattacataaatgtaaaaataagacgacatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatattttttta                                                                                            <  1:3186319‑M1/1‑1 (MQ=255)

tgcgtgttattaaataaatgtaaaaataagacgacatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatattttttta                                                                                            <  1:3186208‑M1/1‑1 (MQ=255)

aaaaCATTAATAACTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATaaaaaa                                                                                            >  1:268157/1‑91 (MQ=255)

 gcgtgttattatataaatgtaaaaataagacgacatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttaa                                                                                           >  1:1564187‑M1/90‑91 (MQ=255)

 aaaCATTAATAACTAACCCTTTCTTGCAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATaaaaaaa                                                                                           <  1:3863536/91‑1 (MQ=255)

  cgtgttattatataaatgtaaaaataagacgacatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAAc                                                                                          <  1:2213042‑M1/3‑1 (MQ=255)

   gtgttattatataaatgtaaaaataagacgacatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAAcc                                                                                         <  1:343109‑M1/4‑1 (MQ=255)

     gttattatataaatgtaaaaataagacgacatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAACCAt                                                                                       <  1:3076272‑M1/6‑1 (MQ=255)

     gttattatataaatgtaaaaataagacgacatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAACCAt                                                                                       >  1:1468443‑M1/86‑91 (MQ=255)

      ttattatataaatgtaaaaataagacgacatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAACCAtt                                                                                      <  1:1057718‑M1/7‑1 (MQ=255)

      ttAATAACTAACCCTTTCTTACAAACCACCTAGCCCAAAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCAtt                                                                                      >  1:3482027/1‑91 (MQ=255)

       taataaCTAACCCTTTCTTACAAACCACCTAGCGCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTc                                                                                     <  1:3403511/91‑1 (MQ=255)

       taataaCTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTc                                                                                     >  1:1999255/1‑91 (MQ=255)

       taataaCTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTc                                                                                     >  1:668765/1‑91 (MQ=255)

        attatataaatgtaaaaataagacgacatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttctAACCATTcc                                                                                    >  1:814036‑M1/83‑91 (MQ=255)

            actaacCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCAt                                                                                >  1:413638/1‑91 (MQ=255)

             ctaacCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCAtt                                                                               >  1:3359425/1‑91 (MQ=255)

                acCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAAc                                                                            <  1:1627535/91‑1 (MQ=255)

                 cccTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACt                                                                           >  1:3200466/1‑91 (MQ=255)

                  ccTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACtt                                                                          >  1:2023433/1‑91 (MQ=255)

                   gtaaaaataagacgacatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAACCATTCCGCATTAACttt                                                                         >  1:3624360‑M1/72‑91 (MQ=255)

                   cTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACttt                                                                         >  1:4108128/1‑91 (MQ=255)

                   cTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACttt                                                                         <  1:2222068/91‑1 (MQ=255)

                   cTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACttt                                                                         <  1:2194794/91‑1 (MQ=255)

                     ttCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTgg                                                                       >  1:1178313/1‑91 (MQ=255)

                      tCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGc                                                                      <  1:2739976/91‑1 (MQ=255)

                      tCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGc                                                                      <  1:3610872/91‑1 (MQ=255)

                      tCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGc                                                                      <  1:3901191/91‑1 (MQ=255)

                       cTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCa                                                                     <  1:1707119/91‑1 (MQ=255)

                       cTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCa                                                                     >  1:762563/1‑91 (MQ=255)

                        ttACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCaa                                                                    <  1:1750435/91‑1 (MQ=255)

                          aCAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGt                                                                  <  1:29515/91‑1 (MQ=255)

                          aCAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGt                                                                  <  1:2790339/91‑1 (MQ=255)

                          aCAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGt                                                                  <  1:2137401/91‑1 (MQ=255)

                           cAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGtt                                                                 >  1:1581829/1‑91 (MQ=255)

                             gacgacatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAACCATTCCGCATTAACTTTGGCAAGTTgg                                                               >  1:3094359‑M1/62‑91 (MQ=255)

                             aaCCACCTAGCCCATCATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAACAAAACCATTCCGCATTAACTTTGGCAAGTTgg                                                               >  1:3544480/1‑91 (MQ=255)

                             aaCCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTgg                                                               >  1:2898029/1‑91 (MQ=255)

                               ccaccTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGaa                                                             <  1:2347132/91‑1 (MQ=255)

                                gacatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAACCATTCCGCATTAACTTTGGCAAGTTGGAAt                                                            >  1:475839‑M1/59‑91 (MQ=255)

                                 accTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATg                                                           <  1:3791967/91‑1 (MQ=255)

                                 accTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATg                                                           <  1:1492718/91‑1 (MQ=255)

                                 accTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATg                                                           <  1:1938647/91‑1 (MQ=255)

                                 acatgtgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAACCATTCCGCATTAACTTTGGCAAGTTGGAATg                                                           >  1:2138207‑M1/58‑91 (MQ=255)

                                  ccTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATgg                                                          <  1:1134843/91‑1 (MQ=255)

                                  ccTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATgg                                                          >  1:1792962/1‑91 (MQ=255)

                                    tAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGtt                                                        <  1:227332/91‑1 (MQ=255)

                                     aGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTa                                                       >  1:857603/1‑91 (MQ=255)

                                     aGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTa                                                       >  1:862921/1‑91 (MQ=255)

                                     aGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTa                                                       >  1:927850/1‑91 (MQ=255)

                                      gCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTaa                                                      <  1:1396847/91‑1 (MQ=255)

                                       cccATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTaaa                                                     >  1:4033591/1‑91 (MQ=255)

                                       cccATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTaaa                                                     >  1:1851485/1‑91 (MQ=255)

                                       cccATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTaaa                                                     <  1:1691902/91‑1 (MQ=255)

                                       cccATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTaaa                                                     >  1:2505076/1‑91 (MQ=255)

                                        cgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTaaaa                                                    >  1:3090944‑M1/51‑91 (MQ=255)

                                        cgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTaaaa                                                    >  1:2246465‑M1/51‑91 (MQ=255)

                                        ccATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTaaaa                                                    <  1:3465698/91‑1 (MQ=255)

                                         gaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTaaaaa                                                   >  1:843688‑M1/50‑91 (MQ=255)

                                              tgtcgtctaagcaagccaaacgctggcttctaaaatattttttaAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAatat                                              >  1:3120311‑M1/45‑91 (MQ=255)

                                              tatatTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAatat                                              <  1:1086990/91‑1 (MQ=255)

                                              tatatTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAatat                                              <  1:1087108/91‑1 (MQ=255)

                                              tatatTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAatat                                              <  1:2669032/91‑1 (MQ=255)

                                                tatTAAAACGTCATTTTTATTTCAATTAGCGGTAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATAttt                                            >  1:3515524/1‑91 (MQ=255)

                                                  ttAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTa                                          >  1:3831445/1‑91 (MQ=255)

                                                  ttAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTa                                          <  1:1770184/91‑1 (MQ=255)

                                                    aaaaCGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGa                                        >  1:2827777/1‑91 (MQ=255)

                                                        cGTCATTTTTATTTCAATTAGCGGATAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGcc                                    <  1:3866364/91‑1 (MQ=255)

                                                        cGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGcc                                    <  1:507158/91‑1 (MQ=255)

                                                         gTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCa                                   <  1:1191211/91‑1 (MQ=255)

                                                            aTTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCg                                >  1:107535/1‑91 (MQ=255)

                                                            aTTTTTATTTCAATTAGCGGAAAATAAAAAAACCATCCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCg                                <  1:1003216/91‑1 (MQ=255)

                                                             tttttATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGt                               >  1:1970310/1‑91 (MQ=255)

                                                             tttttATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGt                               <  1:2462652/91‑1 (MQ=255)

                                                             tttttATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGt                               >  1:2781108/1‑91 (MQ=255)

                                                              ttttATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGtt                              >  1:582139/1‑91 (MQ=255)

                                                              ttttATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGtt                              <  1:72496/91‑1 (MQ=255)

                                                              ttttATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGtt                              <  1:3627476/91‑1 (MQ=255)

                                                              ttttATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGtt                              <  1:2588457/91‑1 (MQ=255)

                                                                 tATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTgg                           >  1:3962455/1‑91 (MQ=255)

                                                                  aTTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGgc                          <  1:2373182/91‑1 (MQ=255)

                                                                  aTTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGgc                          >  1:1938088/1‑91 (MQ=255)

                                                                   tttCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGgct                         <  1:2034625/91‑1 (MQ=255)

                                                                   tttCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGgct                         >  1:517298/1‑91 (MQ=255)

                                                                       aaTTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGgcttgct                     <  1:156077/91‑1 (MQ=255)

                                                                        aTTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGgcttgctt                    >  1:896526/1‑91 (MQ=255)

                                                                         ttAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTa                   <  1:3073882/91‑1 (MQ=255)

                                                                            gCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAgac                >  1:2639677/1‑91 (MQ=255)

                                                                             cGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAgacg               >  1:1704287/1‑91 (MQ=255)

                                                                             cGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAgacg               <  1:1837906/91‑1 (MQ=255)

                                                                              ggAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAgacga              <  1:205665/91‑1 (MQ=255)

                                                                               gAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAgacgac             <  1:1309002/91‑1 (MQ=255)

                                                                                 aaaTAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACAt           >  1:2968242/1‑91 (MQ=255)

                                                                                  aaTAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATg          <  1:2711212/91‑1 (MQ=255)

                                                                                  aaTAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATg          <  1:1742544/91‑1 (MQ=255)

                                                                                     aaaaaaaCCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTc       <  1:371086/91‑1 (MQ=255)

                                                                                     aaaaaaaCCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTc       <  1:2817335/91‑1 (MQ=255)

                                                                                       aaaaaCCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTcgc     <  1:966573/91‑1 (MQ=255)

                                                                                        aaaaCCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTcgcg    <  1:3919814/91‑1 (MQ=255)

                                                                                          AACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCa  >  1:889137‑M1/1‑91 (MQ=255)

AAAACATTAATAACTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCA  >  USA300TCH1516_ALE/1945978‑1946158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.