BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1946068 =	128 (1.300)	11 (0.130)	8/142	NT	9.8%	intergenic (+119/+355)	USA300HOU_RS09665/USA300HOU_RS15380	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1946105 =	88 (1.010)	11 (0.130)	8/142	NT	9.8%	intergenic (+156/+318)	USA300HOU_RS09665/USA300HOU_RS15380	hypothetical protein/hypothetical protein

Only 100 of 155 total aligned reads displayed.

AGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATATAATAACACGCA  >  USA300TCH1516_ALE/1946015‑1946194

aGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTa                                                                                           >  1:927850/1‑91 (MQ=255)

aGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTa                                                                                           >  1:862921/1‑91 (MQ=255)

 gCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTaa                                                                                          <  1:4002639/91‑1 (MQ=255)

 gCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTaa                                                                                          <  1:3631270/91‑1 (MQ=255)

  cccATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTaaa                                                                                         >  1:4033591/1‑91 (MQ=255)

   cgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTaaaa                                                                                        >  1:2246465‑M1/51‑91 (MQ=255)

   cgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTaaaa                                                                                        >  1:3090944‑M1/51‑91 (MQ=255)

   ccATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTaaaa                                                                                        <  1:3465698/91‑1 (MQ=255)

    gaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTaaaaa                                                                                       >  1:843688‑M1/50‑91 (MQ=255)

         tatatTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAatat                                                                                  <  1:1087108/91‑1 (MQ=255)

         aatatTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGATTAAAAAAatat                                                                                  <  1:3199317/90‑1 (MQ=255)

           tatTAAAACGTCATTTTTATTTCAATTAGCGGTAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATAttt                                                                                >  1:3515524/1‑91 (MQ=255)

            atTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATAtttt                                                                               >  1:2230378/1‑91 (MQ=255)

             ttAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTa                                                                              >  1:3831445/1‑91 (MQ=255)

             ttAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTa                                                                              <  1:1769863/91‑1 (MQ=255)

             ttAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTa                                                                              <  1:1770184/91‑1 (MQ=255)

                 aaCGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAg                                                                          <  1:2907624/91‑1 (MQ=255)

                 aaCGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAg                                                                          <  1:1911060/91‑1 (MQ=255)

                  aCGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGc                                                                         >  1:2853667/1‑91 (MQ=255)

                  aCGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGc                                                                         <  1:861861/91‑1 (MQ=255)

                   cGTCATTTTTATTTCAATTAGCGGATAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGcc                                                                        <  1:3866364/91‑1 (MQ=255)

                   cGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGcc                                                                        <  1:507158/91‑1 (MQ=255)

                       aTTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCg                                                                    >  1:107535/1‑91 (MQ=255)

                       aTTTTTATTTCAATTAGCGGAAAATAAAAAAACCATCCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCg                                                                    <  1:1003216/91‑1 (MQ=255)

                        tttttATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGt                                                                   >  1:1077407/1‑91 (MQ=255)

                        tttttATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGt                                                                   >  1:1970310/1‑91 (MQ=255)

                        tttttATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGt                                                                   <  1:2462652/91‑1 (MQ=255)

                         ttttATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGtt                                                                  >  1:1603842/1‑91 (MQ=255)

                         ttttATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGtt                                                                  <  1:3627419/91‑1 (MQ=255)

                         ttttATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGtt                                                                  <  1:72496/91‑1 (MQ=255)

                         ttttATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGtt                                                                  <  1:2588457/91‑1 (MQ=255)

                           ttATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTg                                                                <  1:3352049/91‑1 (MQ=255)

                             aTTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGgc                                                              <  1:2373182/91‑1 (MQ=255)

                             aTTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGgc                                                              >  1:1938088/1‑91 (MQ=255)

                              tttCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGgct                                                             <  1:2034625/91‑1 (MQ=255)

                              tttCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGgct                                                             >  1:517298/1‑91 (MQ=255)

                               ttCAATTAGCGGAAAATAAAAAAACGATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGgctt                                                            <  1:3870308/91‑1 (MQ=255)

                                  aaTTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGgcttgct                                                         <  1:156077/91‑1 (MQ=255)

                                   aTTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGgcttgctt                                                        >  1:896526/1‑91 (MQ=255)

                                       gCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAgac                                                    >  1:2639677/1‑91 (MQ=255)

                                        cGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAgacg                                                   >  1:1704803/1‑91 (MQ=255)

                                        cGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAgacg                                                   >  1:1704287/1‑91 (MQ=255)

                                        cGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAgacg                                                   <  1:1837906/91‑1 (MQ=255)

                                         ggAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAgacga                                                  <  1:205665/91‑1 (MQ=255)

                                         ggAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAgacga                                                  <  1:205761/91‑1 (MQ=255)

                                          gAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAgacgac                                                 >  1:2793671/1‑91 (MQ=255)

                                          gAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAgacgac                                                 <  1:1841006/91‑1 (MQ=255)

                                          gAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAgacgac                                                 <  1:1309002/91‑1 (MQ=255)

                                           atatttttttaaccattccaacttgccaaagttaatgcggaatggttTAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACa                                                >  1:3120311‑M2/48‑91 (MQ=255)

                                            aaaTAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACAt                                               >  1:2968446/1‑91 (MQ=255)

                                            aaaTAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACAt                                               >  1:2968242/1‑91 (MQ=255)

                                             aaTAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATg                                              >  1:3118494/1‑91 (MQ=255)

                                             aaTAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATg                                              <  1:2711212/91‑1 (MQ=255)

                                                tttttaaccattccaacttgccaaagttaatgcggaatggttAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTc                                           >  1:843688‑M2/43‑91 (MQ=255)

                                                aaaaaaaCCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTc                                           <  1:371086/91‑1 (MQ=255)

                                                aaaaaaaCCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTc                                           <  1:2533692/91‑1 (MQ=255)

                                                aaaaaaaCCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTc                                           <  1:2817335/91‑1 (MQ=255)

                                                 ttttaaccattccaacttgccaaagttaatgcggaatggttAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTcg                                          >  1:3090806‑M2/42‑91 (MQ=255)

                                                  aaaaaCCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTcgc                                         <  1:966573/91‑1 (MQ=255)

                                                   aaaaCCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTcgcg                                        <  1:3919814/91‑1 (MQ=255)

                                                   aaaaCCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTcgcg                                        >  1:2002112/1‑91 (MQ=255)

                                                    aaaCCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGTAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCgcgc                                       <  1:3503345/91‑1 (MQ=255)

                                                     AACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCa                                      >  1:889137‑M1/1‑91 (MQ=255)

                                                      ACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTTGCTTGCTTAGACGACATGTTCGCGCAt                                     >  1:187331‑M1/1‑91 (MQ=255)

                                                      ACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCAt                                     <  1:1401814‑M1/91‑1 (MQ=255)

                                                      ACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCAt                                     <  1:1402118‑M1/91‑1 (MQ=255)

                                                        CATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATgt                                   >  1:2619311‑M1/1‑91 (MQ=255)

                                                        CATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATgt                                   >  1:301013‑M1/1‑91 (MQ=255)

                                                        CATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATgt                                   >  1:3788411‑M1/1‑91 (MQ=255)

                                                         attccaacttgccaaagttaatgcggaatggttAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATgtc                                  >  1:475839‑M2/34‑91 (MQ=255)

                                                         attccaacttgccaaagttaatgcggaatggttAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATgtc                                  >  1:1573982‑M2/34‑91 (MQ=255)

                                                          TTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAGATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATgtcg                                 <  1:3517107‑M1/91‑1 (MQ=255)

                                                          TTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATgtcg                                 >  1:1973468‑M1/1‑91 (MQ=255)

                                                          TTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATgtcg                                 >  1:3640665‑M1/1‑91 (MQ=255)

                                                          TTCCGCATAAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATgtcg                                 >  1:63493‑M1/1‑91 (MQ=255)

                                                           TCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATgtcgt                                >  1:2841485‑M1/1‑91 (MQ=255)

                                                            ccaacttgccaaagttaatgcggaatggttAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATgtcgtc                               >  1:3094359‑M2/31‑91 (MQ=255)

                                                            CCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACCTGTTCGCGCATgtcgtc                               <  1:3555333‑M1/91‑1 (MQ=255)

                                                              aacttgccaaagttaatgcggaatggttAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCtt                             >  1:910956‑M2/29‑91 (MQ=255)

                                                                 ttAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTAtt                          <  1:1184425/91‑1 (MQ=255)

                                                                 ttAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTAtt                          <  1:2859376/91‑1 (MQ=255)

                                                                 ttAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTAtt                          <  1:314283/91‑1 (MQ=255)

                                                                  tAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTAttt                         >  1:358762/1‑91 (MQ=255)

                                                                   aaCTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTAtttt                        <  1:3026350/91‑1 (MQ=255)

                                                                     cTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTa                      >  1:3567971/1‑91 (MQ=255)

                                                                      tttGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTAc                     <  1:3465553/91‑1 (MQ=255)

                                                                      tttGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTAc                     <  1:3426855/91‑1 (MQ=255)

                                                                       ttGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGATTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACa                    <  1:1236541/91‑1 (MQ=255)

                                                                        gccaaaGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACAt                   >  1:77139/5‑91 (MQ=255)

                                                                           cAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTta                >  1:3695659/1‑91 (MQ=255)

                                                                               ttGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTtatata            <  1:2014859/91‑1 (MQ=255)

                                                                               ttGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTtatata            <  1:2015839/91‑1 (MQ=255)

                                                                                 ggaatggttAGAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATataat          >  1:814036‑M2/10‑91 (MQ=255)

                                                                                   aatggttAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATAtaataa        <  1:1057718‑M2/84‑1 (MQ=255)

                                                                                   aatggttAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATAtaataa        <  1:214061‑M2/84‑1 (MQ=255)

                                                                                    atggttAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATATAATAac       <  1:3076272‑M2/85‑1 (MQ=255)

                                                                                     tggttAAAAAAATCTTTTAGAAGCCAGCGTTTGGCTTGCTTAGTCGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATATAATAaca      <  1:4141007‑M2/86‑1 (MQ=255)

                                                                                      ggttAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATATAATAacac     <  1:343109‑M2/87‑1 (MQ=255)

                                                                                       gttAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATATAATAACACg    >  1:638123‑M2/4‑91 (MQ=255)

                                                                                         tAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATGTAATAACACGCa  <  1:3186319‑M2/90‑1 (MQ=255)

AGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCATGTCGTCTTATTTTTACATTTATATAATAACACGCA  >  USA300TCH1516_ALE/1946015‑1946194

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.