| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1965737 = | 62 (0.630) | 6 (0.070) | 4/146 | NT | 9.0% | coding (71/924 nt) | hemH | Ferrochelatase |
| ? | USA300TCH1516_ALE | 1965782 = | 65 (0.720) | coding (26/924 nt) | hemH | Ferrochelatase | |||||
ATTCATTTAAAGGAAGGTATTATCAATGACTAAAAAAATGGGATTATTAGTTATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1965832‑1965737‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccataACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGATTATCTT > USA300TCH1516_ALE/1965782‑1965871 ATTCATTTAAAGGAAGGTATTATCAATGACTAAAAAAATGGGATTATTAGTTATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAG > 1:2534528/1‑91ATTCATTTAAAGGAAGGTATTATCAATGACTAAAAAAATGGGATTATTAGTTATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAG > 1:1425868/1‑91ATTCATTTAAAGGAAGGTATTATCAATGACTAAAAAAATGGGATTATTAGTTATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAG > 1:2011527/1‑91 TTCATTTAAAGGAAGGTATTATCAATGACTAAAAAAATGGGATTATTAGTTATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGC < 1:761320/91‑1 TTCATTTAAAGGAAGGTATTATCAATGACTAAAAAAATGGGATTATTAGTTATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGC < 1:2858820/91‑1 TTCATTTAAAGGAAGGTATTATCAATGACTAAAAAAATGGGATTATTAGTTATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGC < 1:1552698/91‑1 TCATTTAAAGGAAGGTATTATCAATGACTAAAAAAATGGGATTATTAGTTATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCC < 1:1327048/91‑1 TCATTTAAAGGAAGGTATTATCAATGACTAAAAAAATGGGATTATTAGTTATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCC > 1:2170118/1‑91 CATTTAAAGGAAGGTATTATCAATGACTAAAAAAATGGGATTATTAGTTATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCA < 1:1798576/91‑1 ATTTAAAGGAAGGTATTATCAATGACTAAAAAAATGGGATTATTAGTTATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCAT > 1:714613/1‑91 ATTTAAAGGAAGGTATTATCAATGACTAAAAAAATGGGATTATTAGTTATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCAT < 1:4090035/91‑1 ATTTAAAGGAAGGTATTATCAATGACTAAAAAAATGGGATTATTAGTTATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCAT < 1:2764818/91‑1 ATTTAAAGGAAGGTATTATCAATGACTAAAAAAATGGGATTATTAGTTATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCAT < 1:4088288/91‑1 TGACTAAAAAAATGGGATTATTAGTTATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCATAACTAATAATCCCATTTTTTTA > 1:2312881/1‑91 TGACTAAAAAAATGGGATTATTAGTTATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCATAACTAATAATCCCATTTTTTTA > 1:2312953/1‑91 TTATGGCACACCTTATAAAGAAAGTGACATAGAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAGATGAATT > 1:2076152/1‑91 TATGGCACACCTTATAAAGAAAGTGACATAGAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTA > 1:1330651/1‑91 TATGGCACACCTGATAAAGAAAGTGACATAGAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTA > 1:3205278/1‑91 ACACCTTATAAAGAAAGTGACATAGAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTC > 1:1422586/1‑91 AGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGAT < 1:2036934/91‑1 AGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGAT < 1:2225827/91‑1 GCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGATT < 1:3142743/91‑1 GCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGATT < 1:3142671/91‑1 ATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGATTATC > 1:3917401/1‑91 ATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGATTATC < 1:1790505/91‑1 ATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTGTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGATTATC < 1:3293363/91‑1 AACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGATTATCTT < 1:1213967/91‑1 ATTCATTTAAAGGAAGGTATTATCAATGACTAAAAAAATGGGATTATTAGTTATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1965832‑1965737‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccataACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGATTATCTT > USA300TCH1516_ALE/1965782‑1965871 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |