BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1965737 =	62 (0.630)	6 (0.070)	4/146	NT	9.0%	coding (71/924 nt)	hemH	Ferrochelatase
*	?	USA300TCH1516_ALE	1965782 =	65 (0.720)	6 (0.070)	4/146	NT	9.0%	coding (26/924 nt)	hemH	Ferrochelatase

Only 100 of 104 total aligned reads displayed.

AGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGATTATCTT  >  USA300TCH1516_ALE/1965692‑1965871

aGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTgccataagccataa                                                                                           >  1:173186/1‑91 (MQ=255)

aGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTgccataagccataa                                                                                           >  1:1545856/1‑91 (MQ=255)

aGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTgccataagccataa                                                                                           >  1:2421205/1‑91 (MQ=255)

  ttcttcttcAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACt                                                                                         >  1:3825116/1‑91 (MQ=255)

  ttcttcttcAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACt                                                                                         <  1:3028047/91‑1 (MQ=255)

  ttcttcttcAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACt                                                                                         >  1:3824954/1‑91 (MQ=255)

      tcttcAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACtaata                                                                                     <  1:2487001/91‑1 (MQ=255)

       cttcAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACtaataa                                                                                    >  1:1062904/1‑91 (MQ=255)

        ttcAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTaatcat                                                                                   >  1:1136439/1‑91 (MQ=255)

        ttcAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTaataat                                                                                   >  1:1136377/1‑91 (MQ=255)

           aGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATccc                                                                                <  1:613009/91‑1 (MQ=255)

               ggACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCAttt                                                                            >  1:1349474/1‑91 (MQ=255)

                  cGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCAtttttt                                                                         >  1:2966252/1‑91 (MQ=255)

                   gTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCAttttttt                                                                        >  1:1528025/1‑91 (MQ=255)

                   gTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCAttttttt                                                                        >  1:1528470/1‑91 (MQ=255)

                    tttACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTa                                                                       >  1:578042/1‑91 (MQ=255)

                    tttACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTa                                                                       <  1:2250224/91‑1 (MQ=255)

                    tgactaaaaaaatgggattattagttatggcttatggcacaccttataaagaaagtgacatagagccataACTAATAATCCCATTTTTTTa                                                                       >  1:2312953‑M2/71‑91 (MQ=255)

                    tgactaaaaaaatgggattattagttatggcttatggcacaccttataaagaaagtgacatagagccataACTAATAATCCCATTTTTTTa                                                                       >  1:2312881‑M2/71‑91 (MQ=255)

                       aCCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTc                                                                    <  1:1780894/91‑1 (MQ=255)

                        taaaaaaatgggattattagtTATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCa                                                                   >  1:2312881‑M1/22‑91 (MQ=255)

                        taaaaaaatgggattattagtTATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCa                                                                   >  1:2312953‑M1/22‑91 (MQ=255)

                        ccATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCa                                                                   >  1:4094616/1‑91 (MQ=255)

                         aaTGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCAt                                                                  >  1:3994353/2‑91 (MQ=255)

                            gTCTAATATCTGTATAATATGGCTCTATGTCCCTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATGTTTTTAGTCATTGa                                                               >  1:3740303/1‑91 (MQ=255)

                            gTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGa                                                               >  1:2701059/1‑91 (MQ=255)

                            gTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATATTTTTAGTCACTGa                                                               >  1:3741486/1‑91 (MQ=255)

                             tCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGat                                                              <  1:1752864/91‑1 (MQ=255)

                             tCTAATATCTGTATAATATGGCTCTATGTCACTATCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGat                                                              <  1:3403479/91‑1 (MQ=255)

                                aaTATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGataat                                                           >  1:1742367/1‑91 (MQ=255)

                                 atatCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGAGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGataata                                                          >  1:3585451/1‑91 (MQ=255)

                                  tatCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAc                                                         >  1:768502/1‑91 (MQ=255)

                                  tatCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAc                                                         >  1:768562/1‑91 (MQ=255)

                                    tCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCGATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAcct                                                       <  1:4135979/91‑1 (MQ=255)

                                    tCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAcct                                                       >  1:27770/1‑91 (MQ=255)

                                    tCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAcct                                                       >  1:796416/1‑91 (MQ=255)

                                    tCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAcct                                                       <  1:3124553/91‑1 (MQ=255)

                                    tCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAcct                                                       <  1:455580/91‑1 (MQ=255)

                                       gTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAccttcc                                                    <  1:3591022/91‑1 (MQ=255)

                                       gTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAccttcc                                                    >  1:2731544/1‑91 (MQ=255)

                                        tataATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAccttcct                                                   <  1:3645181/91‑1 (MQ=255)

                                        tataATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAccttcct                                                   <  1:3645367/91‑1 (MQ=255)

                                        tataATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAccttcct                                                   >  1:1434143/1‑91 (MQ=255)

                                        tataATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAccttcct                                                   >  1:2615848/1‑91 (MQ=255)

                                          taataTGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCttt                                                 >  1:2351124/1‑91 (MQ=255)

                                          taataTGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCttt                                                 >  1:293643/1‑91 (MQ=255)

                                              ATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAAt                                             <  1:4088288‑M1/91‑1 (MQ=255)

                                              ATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAAt                                             <  1:4090035‑M1/91‑1 (MQ=255)

                                              ATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAAt                                             >  1:714613‑M1/1‑91 (MQ=255)

                                              ATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAAt                                             <  1:2764818‑M1/91‑1 (MQ=255)

                                               TGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATg                                            <  1:1798576‑M1/91‑1 (MQ=255)

                                                GGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGa                                           <  1:1327048‑M1/91‑1 (MQ=255)

                                                GGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGa                                           >  1:2170118‑M1/1‑91 (MQ=255)

                                                 GCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGaa                                          <  1:761320‑M1/91‑1 (MQ=255)

                                                 GCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGaa                                          <  1:2858820‑M1/91‑1 (MQ=255)

                                                 GCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGaa                                          <  1:1552698‑M1/91‑1 (MQ=255)

                                                  CTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAAt                                         >  1:2534528‑M1/1‑91 (MQ=255)

                                                  CTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAAt                                         >  1:1425868‑M1/1‑91 (MQ=255)

                                                  CTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAAt                                         >  1:2011527‑M1/1‑91 (MQ=255)

                                                   ttatggcacaccttataaagaaagtgacatagagccataACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAGATGAAtt                                        >  1:2076152‑M2/40‑91 (MQ=255)

                                                    tatggcacaccttataaagaaagtgacatagagccataACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTa                                       >  1:1330651‑M2/39‑91 (MQ=255)

                                                    tatggcacacctgataaagaaagtgacatagagccataACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTa                                       >  1:3205278‑M2/39‑91 (MQ=255)

                                                    ctATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTa                                       >  1:240098/1‑91 (MQ=255)

                                                     tATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTAt                                      >  1:4138832/1‑91 (MQ=255)

                                                      atctCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATc                                     <  1:2184250/88‑1 (MQ=255)

                                                       tGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCt                                    <  1:2772798/91‑1 (MQ=255)

                                                        gTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCtt                                   >  1:1270587/1‑91 (MQ=255)

                                                        gTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCtt                                   >  1:1270597/1‑91 (MQ=255)

                                                         tCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCttt                                  <  1:768810/91‑1 (MQ=255)

                                                         tCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCttt                                  <  1:1903691/91‑1 (MQ=255)

                                                          cACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTc                                 <  1:1994373/91‑1 (MQ=255)

                                                          acaccttataaagaaagtgacatagagccataACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTc                                 >  1:1422586‑M2/33‑91 (MQ=255)

                                                           aCTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCa                                >  1:1993075/1‑91 (MQ=255)

                                                           aCTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCa                                <  1:513526/91‑1 (MQ=255)

                                                           aCTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCa                                >  1:3874836/1‑91 (MQ=255)

                                                              ttctttATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCAtgt                             <  1:3773233/91‑1 (MQ=255)

                                                                  ttATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCtt                         >  1:356237/1‑91 (MQ=255)

                                                                  ttATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCtt                         >  1:4064880/1‑91 (MQ=255)

                                                                   tataAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATTATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTc                        <  1:3508709/91‑1 (MQ=255)

                                                                   tataAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTc                        <  1:428645/91‑1 (MQ=255)

                                                                       aGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATg                    <  1:1070318/91‑1 (MQ=255)

                                                                       aGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATg                    >  1:2833645/1‑91 (MQ=255)

                                                                       aGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATg                    <  1:2036165/91‑1 (MQ=255)

                                                                       aGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATg                    >  1:3852312/1‑91 (MQ=255)

                                                                       aGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATg                    <  1:1777751/91‑1 (MQ=255)

                                                                          tgtgCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTaa                 >  1:3251879/1‑91 (MQ=255)

                                                                            tgCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTaaaa               >  1:13392/1‑91 (MQ=255)

                                                                            tgCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTaaaa               >  1:2420759/1‑91 (MQ=255)

                                                                             gccataagccataaCTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAGATGAATTATCTTTCATGTGCTTCAATGTAAAAc              >  1:3399834/1‑91 (MQ=255)

                                                                               cataagccataaCTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTa            <  1:564185/91‑1 (MQ=255)

                                                                               cataagccataaCTAATAATCCCATTTTTTTAGTCATTGATAATACATTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTa            >  1:1494179/1‑91 (MQ=255)

                                                                                 taagccataaCTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATg          <  1:1720616/91‑1 (MQ=255)

                                                                                  aagccataaCTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGa         >  1:599045/1‑91 (MQ=255)

                                                                                   agccataACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGAt        <  1:2036934‑M2/84‑1 (MQ=255)

                                                                                   agccataACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGAt        <  1:2225827‑M2/84‑1 (MQ=255)

                                                                                    gccataACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGAtt       <  1:3142671‑M2/85‑1 (MQ=255)

                                                                                    gccataACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGAtt       <  1:3142743‑M2/85‑1 (MQ=255)

                                                                                       ataACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGATTATc    >  1:3917401‑M2/4‑91 (MQ=255)

                                                                                       ataACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTGTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGATTATc    <  1:3293363‑M2/88‑1 (MQ=255)

                                                                                         aACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGATTATCtt  <  1:1213967‑M2/90‑1 (MQ=255)

AGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGATTATCTT  >  USA300TCH1516_ALE/1965692‑1965871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.