| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1965743 | 66 (0.670) | 5 (0.060) | 4/146 | NT | 7.4% | coding (65/924 nt) | hemH | Ferrochelatase |
| ? | USA300TCH1516_ALE | = 1965774 | 65 (0.720) | coding (34/924 nt) | hemH | Ferrochelatase | |||||
GGTGATAAACCACCTATAAATTCATATCTATCTTTCAAATCTTGAAGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1965647‑1965743‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatggctTATGGCACACCTTATAAAGAAAGTGACATAGAGCCATATTATACAGATATTAGACATGGTAAACGTCCATCTGAAGAAGAACTTCAAG < USA300TCH1516_ALE/1965774‑1965687 GGTGATAAACCACCTATAAATTCATATCTATCTTTCAAATCTTGAAGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAAT > 1:3153145/1‑91 TGATAAACCACCTATAAATTCATATCTATCTTTCAAATCTTGAAGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATAT > 1:1434973/1‑91 GATAAACCACCTATAAATTCATATCTATCTTTCAAATCTTGAAGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATG < 1:362541/91‑1 GATAAACCACCTATAAATTCATATCTATCTTTCAAATCTTGAAGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATG > 1:2511040/1‑91 ATAAACCACCTATAAATTCATATCTATCTTTCAAATCTTGAAGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGG > 1:61953/1‑91 AAGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCATA < 1:1524983/91‑1 AGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCATAT < 1:2379398/91‑1 AGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCATAT < 1:2378381/91‑1 CTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCATATTATA < 1:337249/91‑1 GACGTTTACCATGTCTAATATCTGTATAATATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCATATTATACAGATATTAGAC < 1:1630627/91‑1 TATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCATATTATACAGATATTAGACATGGTAAACGTCCATCTGAAGAAGAACTT < 1:2824859/91‑1 TATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCATATTATACAGATATTAGACATGGTAAACGTCCATCTGAAGAAGAACTT < 1:3771871/91‑1 ATGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCATATTATACAGATATTAGACATGGTAAACGTCCATCTGAAGAAGAACTTC < 1:3989068/91‑1 TGGCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCATATTATACAGATATTAGACATGGTAAACGTCCATCTGAAGAAGAACTTCA < 1:1557457/91‑1 GCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCATATTATACAGATATTAGACATGGTAAACGTCCATCTGAAGAAGAACTTCAAG > 1:3027821/1‑91 GCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCATATTATACAGATATTAGACATGGTAAACGTCCATCTGAAGAAGAACTTCAAG > 1:314953/1‑91 GCTTATGGCACACCTTATAAAGAAAGTGACATAGAGCCATATTATACAGATATTAGACATGGTAAACGTCCATCTGAAGAAGAACTTCAAG > 1:316478/1‑91 GGTGATAAACCACCTATAAATTCATATCTATCTTTCAAATCTTGAAGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1965647‑1965743‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatggctTATGGCACACCTTATAAAGAAAGTGACATAGAGCCATATTATACAGATATTAGACATGGTAAACGTCCATCTGAAGAAGAACTTCAAG < USA300TCH1516_ALE/1965774‑1965687 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |