BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1965743	66 (0.670)	5 (0.060)	4/146	NT	7.4%	coding (65/924 nt)	hemH	Ferrochelatase
*	?	USA300TCH1516_ALE	= 1965774	65 (0.720)	5 (0.060)	4/146	NT	7.4%	coding (34/924 nt)	hemH	Ferrochelatase

Only 100 of 107 total aligned reads displayed.

AATCTTGAAGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGA  >  USA300TCH1516_ALE/1965684‑1965864

taattcatttaaaggaaggtattatcaatgactaaaaaaatgggattattagtTATGGCTCTATGTCACTTTCTTTATCAGGTGTgccata                                                                                            >  1:3205278‑M1/54‑91 (MQ=255)

taattcatttaaaggaaggtattatcaatgactaaaaaaatgggattattagtTATGGCTCTATGTCACTTTCTTTATAAGGTGTgccata                                                                                            >  1:1330651‑M1/54‑91 (MQ=255)

aaTCTTGAAGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTgccata                                                                                            <  1:3451706/91‑1 (MQ=255)

aaTCTTGAAGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTgccata                                                                                            >  1:3252862/1‑91 (MQ=255)

 aattcatctaaaggaaggtattatcaatgactaaaaaaatgggattattagtTATGGCTCTATGTCACTTTCTTTATAAGGTGTgccataa                                                                                           >  1:2076152‑M1/53‑91 (MQ=255)

   cTTGAAGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAagc                                                                                         >  1:316478‑M2/1‑88 (MQ=255)

   cTTGAAGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAagc                                                                                         >  1:3027821‑M2/1‑88 (MQ=255)

     tGAAGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAagcca                                                                                       <  1:1557457‑M2/91‑6 (MQ=255)

      gAAGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAagccat                                                                                      <  1:3989068‑M2/91‑7 (MQ=255)

       aaGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAagccata                                                                                     <  1:3771871‑M2/91‑8 (MQ=255)

       aaGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAagccata                                                                                     <  1:2824859‑M2/91‑8 (MQ=255)

        aGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTgccataagccataa                                                                                    >  1:2421205/1‑91 (MQ=255)

        aGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTgccataagccataa                                                                                    >  1:1545856/1‑91 (MQ=255)

        aGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTgccataagccataa                                                                                    >  1:173186/1‑91 (MQ=255)

          ttcttcttcAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACt                                                                                  <  1:3028047/91‑1 (MQ=255)

          ttcttcttcAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACt                                                                                  >  1:3825116/1‑91 (MQ=255)

          ttcttcttcAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACt                                                                                  >  1:3824954/1‑91 (MQ=255)

              tcttcAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACtaata                                                                              <  1:2487001/91‑1 (MQ=255)

               cttcAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACtaataa                                                                             >  1:1062904/1‑91 (MQ=255)

                ttcAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTaatcat                                                                            >  1:1136439/1‑91 (MQ=255)

                ttcAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTaataat                                                                            >  1:1136377/1‑91 (MQ=255)

                   aGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATccc                                                                         <  1:613009/91‑1 (MQ=255)

                       ggACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCAttt                                                                     >  1:1349474/1‑91 (MQ=255)

                       ggACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCAtct                                                                     >  1:3803942/1‑89 (MQ=255)

                          cGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCAtttttt                                                                  >  1:2966252/1‑91 (MQ=255)

                           gTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCAttttttt                                                                 >  1:1528025/1‑91 (MQ=255)

                            tttACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTa                                                                <  1:2250224/91‑1 (MQ=255)

                            tttACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTa                                                                >  1:578042/1‑91 (MQ=255)

                               aCCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTc                                                             <  1:1780894/91‑1 (MQ=255)

                                taaaaaaatgggattattagtTATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCa                                                            >  1:2312881‑M1/22‑91 (MQ=255)

                                taaaaaaatgggattattagtTATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCa                                                            >  1:2312953‑M1/22‑91 (MQ=255)

                                ccATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCa                                                            >  1:4094616/1‑91 (MQ=255)

                                 aaTGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCAt                                                           >  1:3994353/2‑91 (MQ=255)

                                    gTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAagccatattatacagatattagacatggtaaacgtc                                                        <  1:1630627‑M2/91‑37 (MQ=255)

                                    gTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGa                                                        >  1:2701059/1‑91 (MQ=255)

                                    gTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATATTTTTAGTCACTGa                                                        >  1:3741486/1‑91 (MQ=255)

                                     tCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGat                                                       <  1:1752864/91‑1 (MQ=255)

                                     tCTAATATCTGTATAATATGGCTCTATGTCACTATCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGat                                                       <  1:3403479/91‑1 (MQ=255)

                                        aaTATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGataat                                                    >  1:1742367/1‑91 (MQ=255)

                                         atatCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGataata                                                   >  1:2761371/1‑91 (MQ=255)

                                         atatCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGAGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGataata                                                   >  1:3585451/1‑91 (MQ=255)

                                          tatCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAc                                                  >  1:768502/1‑91 (MQ=255)

                                          tatCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAc                                                  >  1:768562/1‑91 (MQ=255)

                                            tCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAcct                                                <  1:455580/91‑1 (MQ=255)

                                            tCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAcct                                                <  1:3124553/91‑1 (MQ=255)

                                            tCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAcct                                                >  1:27770/1‑91 (MQ=255)

                                            tCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAcct                                                >  1:796416/1‑91 (MQ=255)

                                               gTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAccttcc                                             >  1:2731544/1‑91 (MQ=255)

                                               gTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAccttcc                                             <  1:3591022/91‑1 (MQ=255)

                                                tataATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAagccatattatacagatattagacatggtaaacgtccatctgaagaag                                            <  1:337249‑M2/91‑49 (MQ=255)

                                                tataATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAccttcct                                            >  1:1434143/1‑91 (MQ=255)

                                                tataATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAccttcct                                            <  1:3645181/91‑1 (MQ=255)

                                                tataATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAccttcct                                            <  1:3645367/91‑1 (MQ=255)

                                                tataATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATAccttcct                                            >  1:2615848/1‑91 (MQ=255)

                                                  taataTGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCttt                                          >  1:293643/1‑91 (MQ=255)

                                                  taataTGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCttt                                          >  1:2351124/1‑91 (MQ=255)

                                                    atatGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAagccatattatacagatattagacatggtaaacgtccatctgaagaagaact                                        <  1:2379398‑M2/91‑53 (MQ=255)

                                                    atatGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAagccatattatacagatattagacatggtaaacgtccatctgaagaagaact                                        <  1:2378381‑M2/91‑53 (MQ=255)

                                                     tatGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAagccatattatacagatattagacatggtaaacgtccatctgaagaagaactt                                       <  1:1524983‑M2/91‑54 (MQ=255)

                                                      ATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAAt                                      >  1:714613‑M1/1‑91 (MQ=255)

                                                      ATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAAt                                      <  1:4088288‑M1/91‑1 (MQ=255)

                                                      ATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAAt                                      <  1:4090035‑M1/91‑1 (MQ=255)

                                                      ATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAAt                                      <  1:2764818‑M1/91‑1 (MQ=255)

                                                       TGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATg                                     <  1:1798576‑M1/91‑1 (MQ=255)

                                                        GGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGa                                    >  1:2170118‑M1/1‑91 (MQ=255)

                                                        GGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGa                                    <  1:1327048‑M1/91‑1 (MQ=255)

                                                         GCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGaa                                   <  1:2858820‑M1/91‑1 (MQ=255)

                                                         GCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGaa                                   <  1:761320‑M1/91‑1 (MQ=255)

                                                         GCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGaa                                   <  1:1552698‑M1/91‑1 (MQ=255)

                                                          CTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAAt                                  >  1:1425868‑M1/1‑91 (MQ=255)

                                                            ctATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTa                                >  1:240098/1‑91 (MQ=255)

                                                             tATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTAt                               >  1:4138832/1‑91 (MQ=255)

                                                              atctCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATc                              <  1:2184250/88‑1 (MQ=255)

                                                               tGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCt                             <  1:2772798/91‑1 (MQ=255)

                                                                gTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCtt                            >  1:1270587/1‑91 (MQ=255)

                                                                gTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCtt                            >  1:1270597/1‑91 (MQ=255)

                                                                 tCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCttt                           <  1:768810/91‑1 (MQ=255)

                                                                 tCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCttt                           <  1:1903691/91‑1 (MQ=255)

                                                                  cACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTc                          <  1:1994373/91‑1 (MQ=255)

                                                                   aCTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCa                         >  1:3874836/1‑91 (MQ=255)

                                                                   aCTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCa                         >  1:1993075/1‑91 (MQ=255)

                                                                   aCTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCa                         <  1:513526/91‑1 (MQ=255)

                                                                      ttctttATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCAtgt                      <  1:3773233/91‑1 (MQ=255)

                                                                          ttATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCtt                  >  1:4064880/1‑91 (MQ=255)

                                                                          ttATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCtt                  >  1:356237/1‑91 (MQ=255)

                                                                           tataAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATTATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTc                 <  1:3508709/91‑1 (MQ=255)

                                                                           tataAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTc                 <  1:428645/91‑1 (MQ=255)

                                                                               aGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATg             <  1:1070318/91‑1 (MQ=255)

                                                                               aGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATg             >  1:2833645/1‑91 (MQ=255)

                                                                               aGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATg             <  1:2036165/91‑1 (MQ=255)

                                                                               aGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATg             >  1:3852312/1‑91 (MQ=255)

                                                                               aGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATg             <  1:1777751/91‑1 (MQ=255)

                                                                                  tgtgCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTaa          >  1:3251879/1‑91 (MQ=255)

                                                                                    tgCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTaaaa        >  1:13392/1‑91 (MQ=255)

                                                                                    tgCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTaaaa        >  1:2420759/1‑91 (MQ=255)

                                                                                     gccataagccataaCTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAGATGAATTATCTTTCATGTGCTTCAATGTAAAAc       >  1:3399834/1‑91 (MQ=255)

                                                                                       cataagccataaCTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTa     <  1:564185/91‑1 (MQ=255)

                                                                                       cataagccataaCTAATAATCCCATTTTTTTAGTCATTGATAATACATTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTa     >  1:1494179/1‑91 (MQ=255)

                                                                                         taagccataaCTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATg   <  1:1720616/91‑1 (MQ=255)

                                                                                          aagccataaCTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGa  >  1:599045/1‑91 (MQ=255)

AATCTTGAAGTTCTTCTTCAGATGGACGTTTACCATGTCTAATATCTGTATAATATGGCTCTATGTCACTTTCTTTATAAGGTGTGCCATAAGCCATAACTAATAATCCCATTTTTTTAGTCATTGATAATACCTTCCTTTAAATGAATTATCTTTCATGTGCTTCAATGTAAAACTATGA  >  USA300TCH1516_ALE/1965684‑1965864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.