| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1980867 = | 71 (0.720) | 6 (0.070) | 5/140 | NT | 8.8% | intergenic (‑109/+70) | USA300HOU_RS09865/USA300HOU_RS09870 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1980913 = | 63 (0.730) | intergenic (‑155/+24) | USA300HOU_RS09865/USA300HOU_RS09870 | hypothetical protein/hypothetical protein | |||||
AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1980966‑1980867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGA > USA300TCH1516_ALE/1980913‑1981002 AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGC > 1:987305/1‑91AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGC < 1:552811/91‑1AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGC > 1:2681935/1‑91AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGC > 1:2681887/1‑91AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGC > 1:2681081/1‑91AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGC > 1:2296249/1‑91AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGC > 1:195009/1‑91 ATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTTATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCA < 1:4139353/91‑1 TGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCAT > 1:1606648/1‑91 GCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATC < 1:819544/91‑1 CTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCG < 1:1289140/91‑1 CTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCG > 1:2532387/1‑91 CTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCG > 1:1282313/1‑91 AAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCT > 1:3447346/1‑91 AAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCT > 1:1749191/1‑91 AAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTT < 1:303884/91‑1 AAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTT < 1:303161/91‑1 AGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTT > 1:99819/1‑91 AGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTT < 1:2405277/91‑1 AAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCT > 1:3986182/1‑91 AAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCT > 1:1738973/1‑91 GATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGC > 1:893721/1‑91 ATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCA > 1:82521/1‑91 GTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATT > 1:691309/1‑91 TAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTT > 1:2542152/1‑91 ATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTC > 1:1777903/1‑91 ATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTC < 1:1762773/91‑1 ATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTC < 1:1763302/91‑1 ATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTC < 1:1763292/91‑1 ATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTC > 1:2965032/1‑91 CGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCAT < 1:2982475/91‑1 TTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTT > 1:1680434/1‑91 TTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTT > 1:3586550/1‑91 TTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAG > 1:1659475/1‑91 TATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGA > 1:932509/1‑91 AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1980966‑1980867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGA > USA300TCH1516_ALE/1980913‑1981002 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |