BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1980867 =	71 (0.720)	6 (0.070)	5/140	NT	8.8%	intergenic (‑109/+70)	USA300HOU_RS09865/USA300HOU_RS09870	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1980913 =	63 (0.730)	6 (0.070)	5/140	NT	8.8%	intergenic (‑155/+24)	USA300HOU_RS09865/USA300HOU_RS09870	hypothetical protein/hypothetical protein

Only 100 of 104 total aligned reads displayed.

AATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGA  >  USA300TCH1516_ALE/1980824‑1981002

aaTCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttat                                                                                          >  1:686228/1‑91 (MQ=255)

 aTCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttatt                                                                                         <  1:1495352/91‑1 (MQ=255)

 aTCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttatt                                                                                         <  1:509153/91‑1 (MQ=255)

   cATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattat                                                                                       <  1:1099309/91‑1 (MQ=255)

      ttCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattattta                                                                                    >  1:3189702/1‑91 (MQ=255)

      ttCACTTTCTGCACAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattattta                                                                                    >  1:3189681/1‑91 (MQ=255)

        cACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatttatt                                                                                  >  1:211097/1‑91 (MQ=255)

        cACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatttatt                                                                                  >  1:211000/1‑91 (MQ=255)

        cACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatttatt                                                                                  >  1:210988/1‑91 (MQ=255)

          cTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTaa                                                                                >  1:2117691/1‑91 (MQ=255)

           tttCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTaaa                                                                               <  1:1681087/91‑1 (MQ=255)

           tttCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTaaa                                                                               <  1:1681211/91‑1 (MQ=255)

           tttCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTaaa                                                                               <  1:1681017/91‑1 (MQ=255)

           tttCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTaaa                                                                               <  1:290991/91‑1 (MQ=255)

             tCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAg                                                                             <  1:1567557/91‑1 (MQ=255)

             tCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAg                                                                             <  1:2798102/91‑1 (MQ=255)

             tCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAg                                                                             <  1:2782497/91‑1 (MQ=255)

              cTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGt                                                                            >  1:3089526/1‑91 (MQ=255)

              cTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGt                                                                            >  1:3570432/1‑91 (MQ=255)

              cTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGt                                                                            >  1:1697785/1‑91 (MQ=255)

                gCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtat                                                                          >  1:1339142/1‑91 (MQ=255)

                   cAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtatata                                                                       >  1:1720550/1‑91 (MQ=255)

                   cAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtatata                                                                       >  1:1857353/1‑91 (MQ=255)

                    aaTTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAg                                                                      >  1:3786839/1‑91 (MQ=255)

                       ttattattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGcc                                                                   >  1:553842/1‑91 (MQ=255)

                         attattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTa                                                                 >  1:2693832/1‑91 (MQ=255)

                          ttattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAg                                                                <  1:35525/91‑1 (MQ=255)

                          ttattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAg                                                                >  1:3781476/1‑91 (MQ=255)

                           tattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGa                                                               >  1:1520524/1‑91 (MQ=255)

                           tattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGa                                                               <  1:2131679/91‑1 (MQ=255)

                                   tacatacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACt                                                       <  1:1888786/91‑1 (MQ=255)

                                    acatacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTa                                                      <  1:3057253/91‑1 (MQ=255)

                                    acatacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTa                                                      <  1:496354/91‑1 (MQ=255)

                                     catacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTaa                                                     >  1:4138175/1‑91 (MQ=255)

                                      atacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAt                                                    <  1:3744925/91‑1 (MQ=255)

                                      atacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAt                                                    >  1:2875745/1‑91 (MQ=255)

                                      atacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAt                                                    <  1:1394906/91‑1 (MQ=255)

                                         caAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAttct                                                 <  1:2220402/91‑1 (MQ=255)

                                            aaagcgatgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATtcttct                                              >  1:3986182‑M2/46‑91 (MQ=255)

                                            aaagcgatgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATtcttct                                              >  1:1738973‑M2/46‑91 (MQ=255)

                                            AAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATtcttct                                              <  1:2405277‑M1/91‑1 (MQ=255)

                                             AAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTcttctt                                             <  1:303884‑M1/91‑1 (MQ=255)

                                             AAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTcttctt                                             <  1:303161‑M1/91‑1 (MQ=255)

                                              AGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCttt                                            >  1:1749191‑M1/1‑91 (MQ=255)

                                              AGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCttt                                            >  1:3447346‑M1/1‑91 (MQ=255)

                                                CGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAg                                          >  1:1282313‑M1/1‑91 (MQ=255)

                                                CGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAg                                          <  1:1289140‑M1/91‑1 (MQ=255)

                                                CGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAg                                          >  1:2532387‑M1/1‑91 (MQ=255)

                                                 gatgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGc                                         >  1:893721‑M2/41‑91 (MQ=255)

                                                 GATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGc                                         <  1:819544‑M1/91‑1 (MQ=255)

                                                  atgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCa                                        >  1:82521‑M2/40‑91 (MQ=255)

                                                  ATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCa                                        >  1:1606648‑M1/1‑91 (MQ=255)

                                                   TGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATAAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAt                                       <  1:4139353‑M1/91‑1 (MQ=255)

                                                    gtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAtt                                      >  1:691309‑M2/38‑91 (MQ=255)

                                                    GCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAtt                                      <  1:552811‑M1/91‑1 (MQ=255)

                                                    GCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAtt                                      >  1:2681081‑M1/1‑91 (MQ=255)

                                                    GCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAtt                                      >  1:987305‑M1/1‑91 (MQ=255)

                                                    GCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAtt                                      >  1:2681935‑M1/1‑91 (MQ=255)

                                                    GCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAtt                                      >  1:195009‑M1/1‑91 (MQ=255)

                                                    GCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAtt                                      >  1:2296249‑M1/1‑91 (MQ=255)

                                                    GCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAtt                                      >  1:2681887‑M1/1‑91 (MQ=255)

                                                     taacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAttt                                     >  1:2542152‑M2/37‑91 (MQ=255)

                                                     ccTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAttt                                     >  1:2688112/1‑91 (MQ=255)

                                                     ccTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAttt                                     <  1:1867589/91‑1 (MQ=255)

                                                     ccTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAttt                                     >  1:1942112/1‑91 (MQ=255)

                                                     ccTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAttt                                     >  1:1539574/1‑91 (MQ=255)

                                                     ccTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAttt                                     >  1:2987299/1‑91 (MQ=255)

                                                     ccTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAttt                                     >  1:872734/1‑91 (MQ=255)

                                                          ccTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGtt                                >  1:2510264/1‑91 (MQ=255)

                                                          ccTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGtt                                >  1:2452625/1‑91 (MQ=255)

                                                          ccTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGtt                                >  1:3682698/1‑91 (MQ=255)

                                                           ctctCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTa                               <  1:2459995/91‑1 (MQ=255)

                                                           ctctCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTa                               <  1:2459981/91‑1 (MQ=255)

                                                             ctcGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTaaa                             >  1:1574309/1‑91 (MQ=255)

                                                             ctcGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTaaa                             >  1:1647538/1‑91 (MQ=255)

                                                             ctcGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTaaa                             >  1:1647608/1‑91 (MQ=255)

                                                              tcGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAg                            <  1:1557405/91‑1 (MQ=255)

                                                              tcGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAg                            <  1:1127233/91‑1 (MQ=255)

                                                               cGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGt                           >  1:3905208/1‑91 (MQ=255)

                                                                gAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTa                          >  1:3541492/1‑91 (MQ=255)

                                                                     aGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGttt                     >  1:872972/1‑91 (MQ=255)

                                                                     aGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGttt                     <  1:2683296/91‑1 (MQ=255)

                                                                     aGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGttt                     <  1:2683197/91‑1 (MQ=255)

                                                                     aGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGttt                     <  1:3414271/91‑1 (MQ=255)

                                                                      ggTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTc                    >  1:3111987/1‑91 (MQ=255)

                                                                      ggTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTc                    >  1:1914112/1‑91 (MQ=255)

                                                                      ggTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGCTTc                    >  1:3741203/1‑91 (MQ=255)

                                                                         gtgtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGc                 <  1:1768577/91‑1 (MQ=255)

                                                                         gtgtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGc                 >  1:838651/1‑91 (MQ=255)

                                                                            ttACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtc              >  1:2437734/1‑91 (MQ=255)

                                                                            ttACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtc              <  1:1147804/91‑1 (MQ=255)

                                                                                atcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtctctc          <  1:1763292‑M2/82‑1 (MQ=255)

                                                                                atcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtctctc          >  1:2965032‑M2/10‑91 (MQ=255)

                                                                                atcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtctctc          <  1:1763302‑M2/82‑1 (MQ=255)

                                                                                atcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtctctc          >  1:1777903‑M2/10‑91 (MQ=255)

                                                                                  cgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCAt        <  1:2982475‑M2/84‑1 (MQ=255)

                                                                                     ttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCAtttt     >  1:3586550‑M2/5‑91 (MQ=255)

                                                                                     ttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCAtttt     >  1:1680434‑M2/5‑91 (MQ=255)

                                                                                       ttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAg   >  1:1659475‑M2/3‑91 (MQ=255)

                                                                                        tATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGa  >  1:932509‑M2/2‑91 (MQ=255)

AATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGA  >  USA300TCH1516_ALE/1980824‑1981002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.