| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1990341 = | 52 (0.530) | 6 (0.080) | 5/124 | NT | 12.3% | intergenic (‑90/+61) | queG/tcyC_1 | Epoxyqueuosine reductase/L‑cystine import ATP‑binding protein TcyC |
| ? | USA300TCH1516_ALE | 1990392 = | 45 (0.590) | intergenic (‑141/+10) | queG/tcyC_1 | Epoxyqueuosine reductase/L‑cystine import ATP‑binding protein TcyC | |||||
ACCGCAACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCAAGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1990447‑1990341‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatcatatattcaagcttCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGACTCTA > USA300TCH1516_ALE/1990392‑1990481 ACCGCAACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATA < 1:1518896/91‑1 CCGCAACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATAT > 1:527971/1‑91 CCGCAACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATAT < 1:3373533/91‑1 AACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATA > 1:1250848/1‑91 AACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATA < 1:3462334/91‑1 ATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATAT > 1:2186443/1‑91 ATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATAT > 1:132261/1‑91 GAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTC > 1:117606/1‑91 GAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTC < 1:2337416/91‑1 AAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCA < 1:2930868/91‑1 AAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCA < 1:1534732/91‑1 AGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCAAG < 1:2261314/91‑1 AGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCAAG < 1:2857482/91‑1 AGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCAAG > 1:2103064/1‑91 AGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCAAG < 1:1338551/91‑1 ACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCAAGCTT > 1:2280913/1‑91 ACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTG > 1:679875/1‑91 TATATGATACGCACCACAAAGTTATATCATATATTCAAGCTTCGTTAGGTTGTTATACTACTCTTGCTAAGAAATTTTGTGTTCTTTCATG > 1:3396662/1‑91 TATATGATACGCACCACAAAGTTATATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATG > 1:2850693/1‑91 ATATGATACGCACCACAAAGTTATATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGT > 1:1164715/1‑91 ATGATACGCACCACAAAGTTATATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTG > 1:112066/1‑91 TGATACGCACCACAAAGTTATATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGC > 1:3531226/1‑91 gATATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCG > 1:743747/2‑91 TATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGAC < 1:1147497/91‑1 TATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGAC < 1:2590046/91‑1 TCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTG > 1:1555621/1‑91 TCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTG > 1:1902924/1‑91 CATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGG < 1:77835/91‑1 CATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGG < 1:1299873/91‑1 CATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGG < 1:518588/91‑1 ATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGT > 1:2426529/1‑91 TATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTG < 1:1251219/91‑1 TTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCC < 1:1859941/91‑1 AGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGAC > 1:3527571/1‑91 AGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGAC > 1:747079/1‑91 GCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGACT < 1:2193456/91‑1 CTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGACTC > 1:1434001/1‑91 CTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGACTC > 1:2127522/1‑91 TCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGACTCTA > 1:2052955/1‑91 TCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGACTCTA > 1:3125753/1‑91 TCGTTAGGTTGTCATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGACTCTA > 1:3199415/1‑91 ACCGCAACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCAAGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1990447‑1990341‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatcatatattcaagcttCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGACTCTA > USA300TCH1516_ALE/1990392‑1990481 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |