| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1996391 | 58 (0.590) | 4 (0.050) | 4/144 | NT | 7.4% | noncoding (66/74 nt) | USA300TCH1516_01862 | tRNA‑His |
| ? | USA300TCH1516_ALE | = 1996449 | 48 (0.540) | noncoding (8/74 nt) | USA300TCH1516_01862 | tRNA‑His | |||||
CCAATAACTGGGCTAGCTGGATTCGAACCAACGAGTGACGGAGTCAAAGTCCGTTGCCTTACCGCTTGGCTATAGCCCATTAATAATAAGGGCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1996294‑1996391‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggctgTGGTGAAGTGGTTAACACATCGGATTGTGGTTCCGACATTCGAGGGTTCGATCCCCTTCAGCCGCCCTTATTATTAATGGGCTATAGCCA < USA300TCH1516_ALE/1996449‑1996360 CCAATAACTGGGCTAGCTGGATTCGAACCAACGAGTGACGGAGTCAAAGTCCGTTGCCTTACCGCTTGGCTATAGCCCATTAATAATAAGG > 1:4080425/1‑91 CAATAACTGGGCTAGCTGGATTCGAACCAACGAGTGACGGAGTCAAAGTCCGTTGCCTTACCGCTTGGCTATAGCCCATTAATAATAAGGG < 1:665348/91‑1 CTGGGCTAGCTGGATTCGAACCAACGAGTGACGGAGTCAAAGTCCGTTGCCTTACCGCTTGGCTATAGCCCATTAATAATAAGGGCGGCTG < 1:3131404/91‑1 CTGGGCTAGCTGGATTCGAACCAACGAGTGACGGAGTCAAAGTCCGTTGCCTTACCGCTTGGCTATAGCCCATTAATAATAAGGGCGGCTG < 1:3480501/91‑1 GCTTGGCTATAGCCCATTAATAATAAGGGCGGCTGTGGTGAAGTGGTTAACACATCGGATTGTGGTTCCGACATTCGAGGGTTCGATCCCC < 1:1085717/91‑1 CTTGGCTATAGCCCATTAATAATAAGGGCGGCTGTGGTGAAGTGGTTAACACATCGGATTGTGGTTCCGACATTCGAGGGTTCGATCCCCT < 1:2381002/91‑1 TTGGCTATCGCCCATTAATAATAAGGGCGGCTGTGGTGAAGTGGTTAACACATCGGATTGTGGTTCCGACATTCGAGGGTTCGATCCCCTT < 1:3346434/91‑1 TGGCTATAGCCCATTAATAATAAGGGCGGCTGTGGTGAAGTGGTTAACACATCGGATTGTGGTTCCGACATTCGAGGGTTCGATCCCCTTC < 1:2522753/91‑1 GGCGGCTGTGGTGAAGTGGTTAACACATCGGATTGTGGTTCCGACATTCGAGGGTTCGATCCCCTTCAGCCGCCCTTATTATTAATGGGCT > 1:1000990/1‑91 GGCGGCTGTGGTGAAGTGGTTAACACATCGGATTGTGGTTCCGACATTCGAGGGTTCGATCCCCTTCAGCCGCCCTTATTATTAATGGGCT < 1:1033516/91‑1 GCGGCTGTGGTGAAGTGGTTAACACATCGGATTGTGGTTCCGACATTCGAGGGTTCGATCCCCTTCAGCCGCCCTTATTATTAATGGGCTA > 1:1632065/1‑91 GCGGCTGTGGTGAAGTGGTTAACACATCGGATTGTGGTTCCGACATTCGAGGGTTCGATCCCCTTCAGCCGCCCTTATTATTAATGGGCTA > 1:2683032/1‑91 CGGCTGTGGTGAAGTGGTTAACACATCGGATTGTGGTTCCGACATTCGAGGGTTCGATCCCCTTCAGCCGCCCTTATTATTAATGGGCTAT < 1:2800524/91‑1 GTGGTGAAGTGGTTAACACATCGGATTGTGGTTCCGACATTCGAGGGTTCGATCCCCTTCAGCCGCCCTTATTATTAATGGGCTATAGCCA < 1:1757855/91‑1 CCAATAACTGGGCTAGCTGGATTCGAACCAACGAGTGACGGAGTCAAAGTCCGTTGCCTTACCGCTTGGCTATAGCCCATTAATAATAAGGGCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1996294‑1996391‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggctgTGGTGAAGTGGTTAACACATCGGATTGTGGTTCCGACATTCGAGGGTTCGATCCCCTTCAGCCGCCCTTATTATTAATGGGCTATAGCCA < USA300TCH1516_ALE/1996449‑1996360 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |