| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1996391 | 58 (0.590) | 4 (0.050) | 4/144 | NT | 7.4% | noncoding (66/74 nt) | USA300TCH1516_01862 | tRNA‑His |
| ? | USA300TCH1516_ALE | = 1996449 | 48 (0.540) | noncoding (8/74 nt) | USA300TCH1516_01862 | tRNA‑His | |||||
TGGCTATAGCCCATTAATAATAAGGGCGGCTGAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACCTCTATTCTACCGTTGAACTATGCCCCTATTAAA > USA300TCH1516_ALE/1996360‑1996538 | tGGCTATAGCCCATTAATAATAAGGGCGGCTGAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCAc < 1:1757855‑M2/91‑2 (MQ=255) ataGCCCATTAATAATAAGGGCGGCTGAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCAcagccg < 1:2800524‑M2/91‑7 (MQ=255) taGCCCATTAATAATAAGGGCGGCTGAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCAcagccgc > 1:2683032‑M2/1‑84 (MQ=255) taGCCCATTAATAATAAGGGCGGCTGAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCAcagccgc > 1:1632065‑M2/1‑84 (MQ=255) aGCCCATTAATAATAAGGGCGGCTGAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCAcagccgcc < 1:1033516‑M2/91‑9 (MQ=255) aGCCCATTAATAATAAGGGCGGCTGAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCAcagccgcc > 1:1000990‑M2/1‑83 (MQ=255) gCCCATTAATAATAAGGGCGGCTGAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCa > 1:2533425/1‑91 (MQ=255) gCCCATTAATAATAAGGGCGGCTGAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCa < 1:880818/91‑1 (MQ=255) gCCCATTAATAATAAGGGCGGCTGAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCa < 1:1777706/91‑1 (MQ=255) ataataaGGGCGGCTGAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGACAggg > 1:507073/1‑91 (MQ=255) taataaGGGCGGCTGAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAgggg < 1:3786509/91‑1 (MQ=255) aataaGGGCGGCTGAAGGGGATCGAACCCTCGAATGTAGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGc > 1:3499219/1‑91 (MQ=255) aGGGCGGCTGAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTa > 1:682229/1‑91 (MQ=255) aGGGCGGCTGAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTa > 1:2623560/1‑91 (MQ=255) aGGGCGGCTGAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTa > 1:1880359/1‑91 (MQ=255) gggCGGCTGAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAg < 1:1900419/91‑1 (MQ=255) ggcggcTGAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAgg < 1:3139685/91‑1 (MQ=255) ggcTGAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAAt < 1:1671981/91‑1 (MQ=255) gcTGAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATc > 1:889083/1‑91 (MQ=255) gAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCAcagccgcccttattattaatgggctatagcca < 1:2522753‑M2/91‑33 (MQ=255) aaGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCAcagccgcccttattattaatgggcgatagccaa < 1:3346434‑M2/91‑34 (MQ=255) aaGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAAc < 1:2178479/91‑1 (MQ=255) aGGGGATCGAACCCTCGAATGTCGGTACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAAcc < 1:3863994/91‑1 (MQ=255) aGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCAcagccgcccttattattaatgggctatagccaag < 1:2381002‑M2/91‑35 (MQ=255) aGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAAcc > 1:64421/1‑91 (MQ=255) ggggATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCAcagccgcccttattattaatgggctatagccaagc < 1:1085717‑M2/91‑36 (MQ=255) gggATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCca > 1:288288/1‑91 (MQ=255) ggATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCcac < 1:3748285/91‑1 (MQ=255) gATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCAGAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCcaca < 1:3492083/91‑1 (MQ=255) gATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCcaca < 1:3090697/91‑1 (MQ=255) gATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCcaca < 1:3091063/91‑1 (MQ=255) tCGAACCGTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACAcc < 1:2076156/91‑1 (MQ=255) tCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACAcc > 1:3799603/1‑91 (MQ=255) tCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACAcc > 1:151938/1‑91 (MQ=255) cGAACCCTCTAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCa < 1:3965520/91‑1 (MQ=255) aaCCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCaaa < 1:2648398/91‑1 (MQ=255) cccTCGAATGTCGGAACCACAATCCGATGTTTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCACAgg > 1:3330211/1‑91 (MQ=255) cccTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAgg < 1:557955/91‑1 (MQ=255) ccTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGt < 1:597233/91‑1 (MQ=255) ccTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGt < 1:589447/91‑1 (MQ=255) aaTGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTgg > 1:3686974/1‑91 (MQ=255) aTGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGga > 1:852283/1‑91 (MQ=255) tCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGAc > 1:3925869/1‑91 (MQ=255) ggAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACct > 1:4075303/1‑91 (MQ=255) gAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACctc > 1:1032068/1‑91 (MQ=255) gAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACctc > 1:1031870/1‑91 (MQ=255) gAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACctc < 1:3396722/91‑1 (MQ=255) ccACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACCTCTAt < 1:293467/91‑1 (MQ=255) ccACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACCTCTAt < 1:293513/91‑1 (MQ=255) caATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACCTCTATTCt > 1:1550133/1‑91 (MQ=255) caATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACCTCTATTCt < 1:1677970/91‑1 (MQ=255) caATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACCTCTATTCt < 1:2369892/91‑1 (MQ=255) caATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACCTCTATTCt < 1:1355453/91‑1 (MQ=255) tgtgTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACCTCTATTCTACCGTTGa < 1:197717/91‑1 (MQ=255) tAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACCTCTATTCTACCGTTGAACTAt < 1:3055853/91‑1 (MQ=255) aaCCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACCTCTATTCTACCGTTGAACTATg < 1:2281265/91‑1 (MQ=255) ttCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACCTCTATTCTACCGTTGAACTATGCCCCTa > 1:2586038/1‑91 (MQ=255) ttCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACCTCTATTCTACCGTTGAACTATGCCCCTa > 1:518792/1‑91 (MQ=255) tCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACCTCTATTCTACCGTTGAACTATGCCCCTAt > 1:2974258/1‑91 (MQ=255) tCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACCTCTATTCTACCGTTGAACTATGCCCCTAt > 1:2974746/1‑91 (MQ=255) tCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACCTCTATTCTACCGTTGAACTATGCCCCTAt < 1:1524325/91‑1 (MQ=255) accacAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACCTCTATTCTACCGTTGAACTATGCCCCTATTa > 1:1410082/1‑91 (MQ=255) cacaGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACCTCTATTCTACCGTTGAACTATGCCCCTATTaaa > 1:449227/1‑91 (MQ=255) cacaGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACCTCTATTCTACCGTTGAACTATGCCCCTATTaaa > 1:1239739/1‑91 (MQ=255) cacaGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACCTCTATTCTACCGTTGAACTATGCCCCTATTaaa > 1:1804568/1‑91 (MQ=255) | TGGCTATAGCCCATTAATAATAAGGGCGGCTGAAGGGGATCGAACCCTCGAATGTCGGAACCACAATCCGATGTGTTAACCACTTCACCACAGCCGCCATGGCAGGGGCAGTAGGAATCGAACCCACACCAAAGGTTTTGGAGACCTCTATTCTACCGTTGAACTATGCCCCTATTAAA > USA300TCH1516_ALE/1996360‑1996538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |