| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2004069 | 94 (0.960) | 11 (0.130) | 6/142 | NT | 11.6% | intergenic (‑2292/+92) | USA300TCH1516_01884/perR | tRNA‑Ile/Peroxide‑responsive repressor PerR |
| ? | USA300TCH1516_ALE | = 2004081 | 85 (0.970) | intergenic (‑2304/+80) | USA300TCH1516_01884/perR | tRNA‑Ile/Peroxide‑responsive repressor PerR | |||||
TAAAGGATACTAGTTATTAGTTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2003971‑2004069‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagttaaacGACATGAAAGTTGTTTAACTTTTTTTTATGCTTATTCTGAAAAATATTTAAATTGAAGAAAAGAATATTCTAACTACGGAAGTGGTATTA < USA300TCH1516_ALE/2004081‑2003992 TAAAGGATACTAGTTATTAGTTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAA > 1:3413075/1‑91 AAAGGATACTAGTTATTAGTTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAA > 1:1287462/1‑91 AAAGGATACTAGTTATTAGTTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAA > 1:4085446/1‑91 AGGATACTAGTTATTAGTTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGT < 1:703316/91‑1 AGGATACTAGTTATTAGTTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGT < 1:219353/91‑1 AGGATACTAGTTATTAGTTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGT < 1:703887/91‑1 AGGATACTAGTTATTAGTTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGT < 1:780871/91‑1 GGATACTAGTTATTAGTTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTT < 1:3773622/91‑1 GATACTAGTTATTAGTTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTA < 1:4023080/91‑1 GATACTAGTTATTAGTTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTA < 1:3133792/91‑1 GATACTAGTTATTAGTTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTA < 1:3133773/91‑1 GATACTAGTTATTAGTTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTA < 1:2280998/91‑1 TACTAGTTATTAGTTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTAAA < 1:175053/91‑1 ACTAGTTATTAGTTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTAAAC > 1:1771907/1‑91 ACTAGTTATTAGTTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTAAAC < 1:2366879/91‑1 ACTAGTTATTAGTTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTAAAC > 1:1771906/1‑91 ACTAGTTATTAGTTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTAAAC > 1:1772986/1‑91 ACCTCTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTAAACGACATGAAAGTTGTTTA < 1:3736868/91‑1 ACCGCTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTAAACGACATGAAAGTTGTTTA < 1:3737662/91‑1 CCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTAAACGACATGAAAGTTGTTTAA < 1:2776318/91‑1 CACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTAAACGACATGAAAGTTGTTTAAC < 1:4073749/91‑1 ACTTCCGTAGTTAGAATATTCTTTTTTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTAAACGACATGAAAGTTGTTTAACT < 1:3853063/91‑1 ACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTAAACGACATGAAAGTTGTTTAACT < 1:2008136/91‑1 CTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTAAACGACATGAAAGTTGTTTAACTT < 1:44442/91‑1 CTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTAAACGACATGAAAGTTGTTTAACTT < 1:2108364/91‑1 TCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTAAACGACATGAAAGTTGTTTAACTTTT < 1:991436/91‑1 TCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTAAACGACATGAAAGTTGTTTAACTTTT < 1:990582/91‑1 TCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTAAACGACATGAAAGTTGTTTAACTTTT < 1:1981633/91‑1 AAGTTAAACGACATGAAAGTTGTTTAACTTTTTTTTATGCTTATTCTGAAAAATATTTAAATTGAAGAAAAGAATATTCTAACTACGGAAG < 1:3141830/91‑1 AAGTTAAACGACATGAAAGTTGTTTAACTTTTTTTTATGCTTATTCTGAAAAATATTTAAATTGAAGAAAAGAATATTCTAACTACGGAAG > 1:288308/1‑91 AAGTTAAACGACATGAAAGTTGTTTAACTTTTTTTTATGCTTATTCTGAAAAATATTTAAATTGAAGAAAAGAATATTCTAACTACGGAAG < 1:1111076/91‑1 AGTTAAACGACATGAAAGTTGTTTAACTTTTTTTTATGCTTATTCTGAAAAATATGTAAATTGAAGAAAAGAATATTCTAACTACGGAAGT < 1:241781/91‑1 GTTAAACGACATGAAAGTTGTTTAACTTTTTTTTATGCTTATTCTGAAAAATATTTAAATTGAAGAAAAGAATATTCTAACTACGGAAGTG < 1:4022935/91‑1 GTTAAACGACATGAAAGTTGTTTAACTTTTTTTTATGCTTATTCTGAAAAATATTTAAATTGAAGAAAAGAATATTCTAACTACGGAAGTG < 1:1722265/91‑1 TAAACGACATGAAAGTTGTTTAACTTTTTTTTATGCTTATTCTGAAAAATATTTAAATTGAAGAAAAGAATATTCTAACTACGGAAGTGGT < 1:2362225/91‑1 AAACGACATGAAAGTTGTTTAACTTTTTTTTATGCTTATTCTGAAAAATATTTAAATTGAAGAAAAGAATATTCTAACTACGGAAGTGGTA > 1:3571592/1‑91 AAACGACATGAAAGTTGTTTAACTTTTTTTTATGCTTATTCTGAAAAATATTTAAATTGAAGAAAAGAATATTCTAACTACGGAAGTGGTA < 1:2836708/91‑1 ACGACATGAAAGTTGTTTAACTTTTTTTTATGCTTATTCTGAAAAATATTTAAATTGAAGAAAAGAATATTCTAACTACGGAAGTGGTATT < 1:1839077/91‑1 CGACATGAAAGTTGTTTAACTTTTTTTTATGCTTATTCTGAAAAATATTTAAATTGAAGAAAAGAATATTCTAACTACGGAAGTGGTATTA < 1:3827986/91‑1 CGACATGAAAGTTGTTTAACTTTTTTTTATGCTTATTCTGAAAAATATTTAAATTGAAGAAAAGAATATTCTAACTACGGAAGTGGTATTA < 1:961214/91‑1 CGACATGAAAGTTGTTTAACTTTTTTTTAGGCTTATTCTGAAAAATATTTAAATTGAAGAAAAGAATATTCTAACTACGGAAGTGGTATTg < 1:3325039/91‑2 CGACATGAAAGTTGTTTAACTTTTTTTTAGGCTTATTCTGAAAAATATTTAAATTGAAGAAAAGAATATTCTAACTACGGAAGTGGTATTA < 1:3325024/91‑1 TAAAGGATACTAGTTATTAGTTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCATAAAAAAAAGTTAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2003971‑2004069‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagttaaacGACATGAAAGTTGTTTAACTTTTTTTTATGCTTATTCTGAAAAATATTTAAATTGAAGAAAAGAATATTCTAACTACGGAAGTGGTATTA < USA300TCH1516_ALE/2004081‑2003992 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |