BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2004069	94 (0.960)	11 (0.130)	6/142	NT	11.6%	intergenic (‑2292/+92)	USA300TCH1516_01884/perR	tRNA‑Ile/Peroxide‑responsive repressor PerR
*	?	USA300TCH1516_ALE	= 2004081	85 (0.970)	11 (0.130)	6/142	NT	11.6%	intergenic (‑2304/+80)	USA300TCH1516_01884/perR	tRNA‑Ile/Peroxide‑responsive repressor PerR

Only 100 of 125 total aligned reads displayed.

TTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAATTTGTCATACTACCAAAGTTAAATTATTTATCT  >  USA300TCH1516_ALE/2003991‑2004170

ttAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTc                                                                                            >  1:1073659/1‑91 (MQ=255)

ttAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTc                                                                                            <  1:2976574/91‑1 (MQ=255)

ttAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTc                                                                                            >  1:3544065/1‑91 (MQ=255)

 tAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCCT‑AAAAAAAAGTTAAACAACTTTCATGTCg                                                                                           <  1:3325024‑M2/91‑2 (MQ=255)

 tAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCg                                                                                           <  1:3827986‑M2/91‑2 (MQ=255)

 caatACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCCT‑AAAAAAAAGTTAAACAACTTTCATGTCg                                                                                           <  1:3325039‑M2/90‑2 (MQ=255)

  aaTACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCgt                                                                                          <  1:1839077‑M2/91‑3 (MQ=255)

    tACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCgttt                                                                                        <  1:2836708‑M2/91‑5 (MQ=255)

    tACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCgttt                                                                                        >  1:3571592‑M2/1‑87 (MQ=255)

     aCCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCgttta                                                                                       <  1:2362225‑M2/91‑6 (MQ=255)

       cACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCgtttaac                                                                                     <  1:1722265‑M2/91‑8 (MQ=255)

        aCTTCCGTAGTTAGAATATTCTTTTCTTCAATTTACATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCgtttaact                                                                                    <  1:241781‑M2/91‑9 (MQ=255)

         cTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCgtttaactt                                                                                   <  1:3141830‑M2/91‑10 (MQ=255)

         cTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCgtttaactt                                                                                   <  1:1111076‑M2/91‑10 (MQ=255)

           tCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAActtct                                                                                 <  1:718277/91‑1 (MQ=255)

           tCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAActtct                                                                                 <  1:2395604/91‑1 (MQ=255)

           tCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAActtct                                                                                 <  1:2395624/91‑1 (MQ=255)

           tCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAActtct                                                                                 <  1:513909/91‑1 (MQ=255)

           tCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAActtct                                                                                 <  1:2753492/91‑1 (MQ=255)

            ccGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATACGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAActtctt                                                                                >  1:4137074/1‑91 (MQ=255)

             cGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTa                                                                               >  1:3989056/1‑91 (MQ=255)

             cGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTa                                                                               >  1:3895642/1‑91 (MQ=255)

              gtggTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTaa                                                                              >  1:3245665/4‑91 (MQ=255)

               tAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTaaa                                                                             <  1:3135875/91‑1 (MQ=255)

                aGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAat                                                                            >  1:195416/1‑91 (MQ=255)

                 gTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAata                                                                           <  1:152711/91‑1 (MQ=255)

                      aaTATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACg                                                                      <  1:1561032/91‑1 (MQ=255)

                      aaTATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACg                                                                      <  1:1561803/91‑1 (MQ=255)

                       atatTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAGAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGc                                                                     >  1:4138068/1‑91 (MQ=255)

                       atatTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGc                                                                     >  1:4059729/1‑91 (MQ=255)

                        tatTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGct                                                                    <  1:1694715/91‑1 (MQ=255)

                        tatTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGct                                                                    <  1:2655377/91‑1 (MQ=255)

                            cttttcttCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGcttact                                                                >  1:597919/1‑91 (MQ=255)

                             ttttcttCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGcttactt                                                               <  1:3783706/91‑1 (MQ=255)

                             ttttcttCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGcttactt                                                               <  1:3773902/91‑1 (MQ=255)

                               ttcttcAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTt‑at                                                            >  1:926764/1‑91 (MQ=255)

                                 cttcAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGcttacttcata                                                           <  1:4039871/91‑5 (MQ=255)

                                 cttcAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGcttacttcata                                                           <  1:3784973/91‑5 (MQ=255)

                                 cttcAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGcttacttcata                                                           <  1:2899366/91‑5 (MQ=255)

                                 cttcAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑atat                                                          <  1:4021758/91‑1 (MQ=255)

                                 cttcAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑atat                                                          >  1:630658/1‑91 (MQ=255)

                                  ttcAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATg                                                         <  1:952377/91‑1 (MQ=255)

                                     aaTTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAg                                                      <  1:3714549/91‑1 (MQ=255)

                                       tttAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTa                                                    <  1:1109703/91‑1 (MQ=255)

                                          aaaTATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTTCATAT‑AAGTAAGc                                                 <  1:2815896/91‑1 (MQ=255)

                                          aaaTATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGc                                                 >  1:2789563/1‑91 (MQ=255)

                                          aaaTATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGc                                                 <  1:2798937/91‑1 (MQ=255)

                                           aaTATTTTTCAGAATAAGCATAAAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGc                                                 >  1:3145906/1‑91 (MQ=255)

                                           aaTATTTTTCAGAATAAGCATAAAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGc                                                 >  1:3145758/1‑91 (MQ=255)

                                           aaTATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTTCATAT‑AAGTAAGcg                                                <  1:1918032/91‑2 (MQ=255)

                                           aaTATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCt                                                <  1:2967621/91‑1 (MQ=255)

                                           aaTATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCt                                                <  1:597025/91‑1 (MQ=255)

                                           aaTATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTCTAACCTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCt                                                >  1:3988246/1‑91 (MQ=255)

                                            atatTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAGCAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTa                                               <  1:3682268/91‑1 (MQ=255)

                                            atatTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTa                                               <  1:2302861/91‑1 (MQ=255)

                                              atTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTTCATAT‑AAGTAAGcgtaa                                             <  1:644263/91‑5 (MQ=38)

                                               tttttCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACg                                            <  1:211215/91‑1 (MQ=255)

                                                ttttCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGc                                           >  1:1242140/1‑91 (MQ=255)

                                                ttttCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGc                                           >  1:2586541/1‑91 (MQ=255)

                                                 tttCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCt                                          >  1:3701717/1‑91 (MQ=255)

                                                 tttCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCt                                          <  1:2739306/91‑1 (MQ=255)

                                                  ttCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCtt                                         <  1:973225/91‑1 (MQ=255)

                                                   tCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCttt                                        >  1:1455244/1‑91 (MQ=255)

                                                   tCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCttt                                        >  1:3338446/1‑91 (MQ=255)

                                                   tCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCttt                                        <  1:1390410/91‑1 (MQ=255)

                                                   tCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCttt                                        >  1:2250827/1‑91 (MQ=255)

                                                    cAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCtttt                                       <  1:966871/91‑1 (MQ=255)

                                                    cAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCtttt                                       <  1:2157307/91‑1 (MQ=255)

                                                     aGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCttttt                                      <  1:2737314/91‑1 (MQ=255)

                                                     aGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCttttt                                      <  1:1320567/91‑1 (MQ=255)

                                                     aGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCttttt                                      >  1:4029289/1‑91 (MQ=255)

                                                        aTAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTaa                                   >  1:3439232/1‑91 (MQ=255)

                                                           aGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAAttt                                >  1:900626/1‑91 (MQ=255)

                                                           aGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAAttt                                >  1:489605/1‑91 (MQ=255)

                                                           aGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAAttt                                >  1:900559/1‑91 (MQ=255)

                                                            gCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAATTTg                               <  1:2242631/91‑1 (MQ=255)

                                                              aT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAATTTGTc                             <  1:2736785/91‑1 (MQ=255)

                                                                 aaaaaaaaGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAATTTGTCAt                           <  1:3795511/91‑1 (MQ=255)

                                                                  aaaaaaaGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAATTTGTCAta                          <  1:1397701/91‑1 (MQ=255)

                                                                    aaaaaGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAATTTGTCAtact                        >  1:981794/1‑91 (MQ=255)

                                                                     aaaaGTTAAACAACTTTCATGTCgtttaacttttttttatgcttattctgaaaaatatttaaattgaagaaaagaatattctaactacgga                        <  1:1981633‑M2/91‑69 (MQ=255)

                                                                     aaaaGTTAAACAACTTTCATGTCgtttaacttttttttatgcttattctgaaaaatatttaaattgaagaaaagaatattctaactacgga                        <  1:990582‑M2/91‑69 (MQ=255)

                                                                      aaaGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAATTTGTCAtactac                      <  1:1874598/91‑1 (MQ=255)

                                                                       aaGTTAAACAACTTTCATGTCgtttaacttttttttatgcttattctgaaaaatatttaaattgaagaaaagaatattctaactacggaag                      <  1:2108364‑M2/91‑71 (MQ=255)

                                                                       aaGTTAAACAACTTTCATGTCgtttaacttttttttatgcttattctgaaaaatatttaaattgaagaaaagaatattctaactacggaag                      <  1:44442‑M2/91‑71 (MQ=255)

                                                                        aGTTAAACAACTTTCATGTCgtttaacttttttttatgcttattctgaaaaatatttaaattgaagaaaagaatattctaactacggaagt                     <  1:2008136‑M2/91‑72 (MQ=255)

                                                                        aGTTAAACAACTTTCATGTCgtttaacttttttttatgcttattctgaaaaatatttaaattgaaaaaaagaatattctaactacggaagt                     <  1:3853063‑M2/91‑72 (MQ=255)

                                                                        aGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAATTTGTCATACTACCa                    >  1:2990003/1‑91 (MQ=255)

                                                                        aGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAATTTGTCATACTACCa                    >  1:721068/1‑91 (MQ=255)

                                                                         gTTAAACAACTTTCATGTCgtttaacttttttttatgcttattctgaaaaatatttaaattgaagaaaagaatattctaactacggaagtg                    <  1:4073749‑M2/91‑73 (MQ=255)

                                                                           tAAACAACTTTCATGTCgtttaacttttttttatgcttattctgaaaaatatttaaattgaagaaaagaatattctaactacggaagaggt                  <  1:3736868‑M2/91‑75 (MQ=255)

                                                                            aaaCAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAATTTGTCATACTACCAAAGt                >  1:1954853/1‑91 (MQ=255)

                                                                            aaaCAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAATTTGTCATACTACCAAAGt                <  1:3822824/91‑1 (MQ=255)

                                                                             aacaacTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAATTTGTCATACTACCAAAGtt               >  1:2192491/1‑91 (MQ=255)

                                                                             aacaacTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAATTTGTCATACTACCAAAGtt               >  1:2627663/1‑91 (MQ=255)

                                                                             aacaacTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAATTTGTCATACTACCAAAGtt               >  1:2193030/1‑91 (MQ=255)

                                                                               caacTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAATTTGTCATACTACCAAAGTTaa             >  1:4003369/1‑91 (MQ=255)

                                                                                  cTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAATTTGTCATACTACCAAAGTTAAatt          <  1:606293/91‑1 (MQ=255)

                                                                                     tCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAATTTGTCATACTACCAAAGTTAAattatt       <  1:1038844/91‑1 (MQ=255)

                                                                                          tCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAATTTGTCATACTACCAAAGTTAAATTATTTATCt  <  1:3564532/91‑1 (MQ=255)

TTAATACCACTTCCGTAGTTAGAATATTCTTTTCTTCAATTTAAATATTTTTCAGAATAAGCAT‑AAAAAAAAGTTAAACAACTTTCATGTCGTTTAACTTCTTAAATATTACGCTTACTT‑ATATGAAGTAAGCTAACGCTTTTTTAATTTGTCATACTACCAAAGTTAAATTATTTATCT  >  USA300TCH1516_ALE/2003991‑2004170

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.