| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2014149 | 107 (1.090) | 9 (0.100) | 7/148 | NT | 7.6% | intergenic (+49/+212) | USA300HOU_RS10140/USA300HOU_RS10150 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2014182 | 119 (1.310) | intergenic (+82/+179) | USA300HOU_RS10140/USA300HOU_RS10150 | hypothetical protein/hypothetical protein | |||||
GGGTATTTACAGAAGATAAGTTACAACGTAAACTGTATGCTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2014054‑2014149‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccggACAGAGTAAAAATCGTTTTGATTTTCATTCTGCCCGGTTGTTCATTTTTTATAGATTAACTTTAGTGAATAATAACTTGAAATTATTTA < USA300TCH1516_ALE/2014182‑2014094 GGGTATTTACAGAAGATAAGTTACAACGTAAACTGTATGCTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACA > 1:1915408/1‑91 GGTATTTACAGAAGATAAGTTACAACGTAAACTGTATGCTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAA > 1:901228/1‑91 GTATTTACAGAAGATAAGTTACAACGTAAACTGTATGCTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAAC < 1:934086/91‑1 GTATTTACAGAAGATAAGTTACAACGTAAACTGTATGCTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAAC < 1:2200603/91‑1 GTATTTACAGAAGATAAGTTACAACGTAAACTGTATGCTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAAC < 1:2200604/91‑1 GTATTTACAGAAGATAAGTTACAACGTAAACTGTATGCTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAAC > 1:231084/1‑91 TATTTACAGAAGATAAGTTACAACGTAAACTGTATGCTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACC > 1:548938/1‑91 TATTTACAGAAGATAAGTTACAACGTAAACTGTATGCTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACC > 1:2925698/1‑91 ACTGTATGCTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGACAGAGTAAAAATCGTTTTGATTTTC < 1:93083/91‑1 TGTATGCTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGACAGAGTAAAAATCGTTTTGATTTTCAT < 1:1863499/91‑1 CTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGACAGAGTAAAAATCGTTTTGATTTTCATTCTGCC < 1:1658452/91‑1 TAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGACAGAGTAAAAATCGTTTTGATTTTCATTCTGCCC < 1:278581/91‑1 TAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGACAGAGTAAAAATCGTTTTGATTTTCATTCTGCCC < 1:4019462/91‑1 AATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGACAGAGTAAAAATCGTTTTGATTTTCATTCTGCCCGG < 1:2516170/91‑1 AATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGACAGAGTAAAAATCGTTTTGATTTTCATTCTGCCCGG < 1:2515845/91‑1 TCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGACAGAGTAAAAATCGTTTTGATTTTCATTCTGCCCGGTTGTTCA < 1:3414279/91‑1 TTCACTAAAGTTAATCTATAAAAAATGAACAACCGGACAGAGTAAAAATCGTTTTGATTTTCATTCTGCCCGGTTGTTCATTTTTTATAGA < 1:2921381/91‑1 CCGGACAGAGTAAAAATCGTTTTGATTTTCATTTTGCCCGGTTGTTCATTTTTTATAGATTAACTTTAGTGAATAATAACTTGAAATTATT > 1:2934590/1‑91 CGGACAGAGTAAAAATCGTTTTGATTTTCATTCTGCCCGGTTGTTCATTTTTTATAGATTAACTTTAGTGAATAATAACTTGAAATTATTT < 1:2717393/91‑1 GGACAGAGTAAAAATCGTTTTGATTTTCATTCTGCCCGGTTGTTCATTTTTTATAGATTAACTTTAGTGAATAATAACTTGAAATTATTTt > 1:886585/1‑90 GGGTATTTACAGAAGATAAGTTACAACGTAAACTGTATGCTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2014054‑2014149‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccggACAGAGTAAAAATCGTTTTGATTTTCATTCTGCCCGGTTGTTCATTTTTTATAGATTAACTTTAGTGAATAATAACTTGAAATTATTTA < USA300TCH1516_ALE/2014182‑2014094 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |