BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2014149	107 (1.090)	9 (0.100)	7/148	NT	7.6%	intergenic (+49/+212)	USA300HOU_RS10140/USA300HOU_RS10150	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2014182	119 (1.310)	9 (0.100)	7/148	NT	7.6%	intergenic (+82/+179)	USA300HOU_RS10140/USA300HOU_RS10150	hypothetical protein/hypothetical protein

Only 100 of 145 total aligned reads displayed.

GCTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGACTCGAAATATC  >  USA300TCH1516_ALE/2014092‑2014272

gCTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGt                                                                                            <  1:2385376/91‑1 (MQ=255)

  aaaatAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTcc                                                                                          >  1:886585‑M2/2‑89 (MQ=255)

   aaaTAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTccg                                                                                         <  1:2717393‑M2/91‑4 (MQ=255)

        atTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGtttt                                                                                    <  1:2745732/91‑1 (MQ=255)

         tttCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGttttt                                                                                   >  1:595379/1‑91 (MQ=255)

          ttCAAGTTATTGTTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGtttttt                                                                                  <  1:3766844/91‑1 (MQ=255)

          ttCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGtttttt                                                                                  >  1:3741020/1‑91 (MQ=255)

          ttCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGtttttt                                                                                  >  1:209024/1‑91 (MQ=255)

          ttCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGtttttt                                                                                  <  1:252010/91‑1 (MQ=255)

             aaGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAAt                                                                               >  1:2774908/1‑91 (MQ=255)

              aGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATg                                                                              <  1:934791/91‑1 (MQ=255)

               gTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTGTTTTAATGt                                                                             >  1:3969872/1‑91 (MQ=255)

                  attattCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTaaa                                                                          <  1:400301/91‑1 (MQ=255)

                  attattCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTaaa                                                                          >  1:1125174/1‑91 (MQ=255)

                       tCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTAt                                                                     <  1:3678373/91‑1 (MQ=255)

                       tCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTAt                                                                     <  1:4108419/91‑1 (MQ=255)

                        cACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATg                                                                    <  1:3668713/91‑1 (MQ=255)

                        cACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATg                                                                    <  1:1581288/91‑1 (MQ=255)

                         aCTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGa                                                                   >  1:1397208/1‑91 (MQ=255)

                           tAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAAt                                                                 >  1:671929/1‑91 (MQ=255)

                           tAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCAGGTTTTTTAATGTAAAACTATGAAt                                                                 >  1:3877858/1‑91 (MQ=255)

                              aGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCt                                                              <  1:1062580/91‑1 (MQ=255)

                              aGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCt                                                              >  1:2366740/1‑91 (MQ=255)

                              aGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCt                                                              >  1:1650616/1‑91 (MQ=255)

                               gTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCGAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCtt                                                             >  1:3926934/1‑91 (MQ=255)

                               gTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCtt                                                             >  1:3429402/1‑91 (MQ=255)

                               gTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCtt                                                             >  1:1284269/1‑91 (MQ=255)

                               gTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCtt                                                             >  1:350025/1‑91 (MQ=255)

                                ttAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCttt                                                            <  1:1985187/91‑1 (MQ=255)

                                ttAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCttt                                                            <  1:1985295/91‑1 (MQ=255)

                                  aaTCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTa                                                          <  1:2489180/91‑1 (MQ=255)

                                  aaTCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTa                                                          >  1:714798/1‑91 (MQ=255)

                                  aaTCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTa                                                          >  1:915605/1‑91 (MQ=255)

                                  aaTCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTACGGTTTTTTAATGTAAAACTATGAATGCTTTTa                                                          >  1:3675993/1‑91 (MQ=255)

                                   aTCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTAc                                                         >  1:594629/1‑91 (MQ=255)

                                   aTCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTAc                                                         <  1:2432839/91‑1 (MQ=255)

                                    tCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTccggttgttcattttttatagattaactttagtgaa                                                        <  1:2921381‑M2/91‑37 (MQ=255)

                                    tCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACa                                                        >  1:2826498/1‑91 (MQ=255)

                                    tCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACa                                                        >  1:1330147/1‑91 (MQ=255)

                                    tCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACa                                                        >  1:3166255/1‑91 (MQ=255)

                                    tCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACa                                                        >  1:433515/1‑91 (MQ=255)

                                     cTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACaa                                                       <  1:975017/91‑1 (MQ=255)

                                     cTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACaa                                                       >  1:262815/1‑91 (MQ=255)

                                        taAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAAt                                                    >  1:1619348/1‑91 (MQ=255)

                                         aaaaaaTGACCAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTGCAAAATc                                                   >  1:2080936/1‑91 (MQ=255)

                                                gAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAAtt                                            >  1:3657615/1‑91 (MQ=255)

                                                gAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAAtt                                            >  1:934938/1‑91 (MQ=255)

                                                gAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAAtt                                            <  1:646122/91‑1 (MQ=255)

                                                gAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAAtt                                            <  1:240156/91‑1 (MQ=255)

                                                 aacaacCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAAttt                                           >  1:3344447/1‑91 (MQ=255)

                                                 aacaacCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAAttt                                           >  1:3345195/1‑91 (MQ=255)

                                                  acaacCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTta                                          >  1:1230845/1‑91 (MQ=255)

                                                  acaacCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTta                                          <  1:1150499/91‑1 (MQ=255)

                                                   caacCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTtat                                         >  1:655369/1‑91 (MQ=255)

                                                     acCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTatat                                       >  1:222613/1‑91 (MQ=255)

                                                     acCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTatat                                       >  1:222771/1‑91 (MQ=255)

                                                      ccGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTccggttgttcattttttatagattaactttagtgaataataacttgaaattatt                                      <  1:2516170‑M2/91‑55 (MQ=255)

                                                      ccGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTccggttgttcattttttatagattaactttagtgaataataacttgaaattatt                                      <  1:2515845‑M2/91‑55 (MQ=255)

                                                        gggCAGAATGAAAATCAAAACGATTTTTACTCTGTccggttgttcattttttatagattaactttagtgaataataacttgaaattattta                                    <  1:4019462‑M2/91‑57 (MQ=255)

                                                         ggCAGAATGAAAATCAAAACGATTTTTACTCTGTccggttgttcattttttatagattaactttagtgaataataacttgaaattatttag                                   <  1:1658452‑M2/91‑58 (MQ=255)

                                                              aaTGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTaa                              >  1:1277827/1‑91 (MQ=255)

                                                               aTGAAAATCAAAACGATTTTTACTCTGTccggttgttcattttttatagattaactttagtgaataataacttgaaattatttagcataca                             <  1:1863499‑M2/91‑64 (MQ=255)

                                                               aTGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAAc                             >  1:940341/1‑91 (MQ=255)

                                                               aTGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAAc                             >  1:2189784/1‑91 (MQ=255)

                                                               aTGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAAc                             >  1:1241110/1‑91 (MQ=255)

                                                               aTGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAAc                             >  1:1241096/1‑91 (MQ=255)

                                                               aTGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAAc                             >  1:4103700/1‑91 (MQ=255)

                                                                tGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACa                            <  1:1872844/91‑1 (MQ=255)

                                                                tGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACa                            <  1:1873821/91‑1 (MQ=255)

                                                                tGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACa                            <  1:2813811/91‑1 (MQ=255)

                                                                 gAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACaa                           <  1:697141/91‑1 (MQ=255)

                                                                 gAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACaa                           <  1:2653735/91‑1 (MQ=255)

                                                                  aaaaTCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACaaa                          <  1:133259/91‑1 (MQ=255)

                                                                   aaaTCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAAc                         <  1:3780451/91‑1 (MQ=255)

                                                                   aaaTCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAAc                         <  1:2524281/91‑1 (MQ=255)

                                                                    aaTCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACt                        <  1:1032277/91‑1 (MQ=255)

                                                                     aTCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTa                       >  1:367020/1‑91 (MQ=255)

                                                                       cAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTAcc                     <  1:3410143/91‑1 (MQ=255)

                                                                       cAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTAcc                     <  1:3410869/91‑1 (MQ=255)

                                                                       cAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTAcc                     <  1:3410028/91‑1 (MQ=255)

                                                                       cAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTAcc                     >  1:1248822/1‑91 (MQ=255)

                                                                       cAAAACGATTTTTACTCTGTCCGGTTCTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTAcc                     >  1:2943270/1‑91 (MQ=255)

                                                                        aaaaCGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCt                    <  1:1517948/91‑1 (MQ=255)

                                                                        aaaaCGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCt                    <  1:1517865/91‑1 (MQ=255)

                                                                          aaCGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCttt                  <  1:2901424/91‑1 (MQ=255)

                                                                          aaCGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCttt                  >  1:2737062/1‑91 (MQ=255)

                                                                            cGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTaa                <  1:2581878/91‑1 (MQ=255)

                                                                            cGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTaa                <  1:743704/91‑1 (MQ=255)

                                                                             gATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAAt               >  1:3616464/1‑91 (MQ=255)

                                                                              aTTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATg              <  1:1220322/91‑1 (MQ=255)

                                                                              aTTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATg              <  1:682922/91‑1 (MQ=255)

                                                                              aTTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATg              <  1:1220472/91‑1 (MQ=255)

                                                                              aTTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATg              <  1:1220338/91‑1 (MQ=255)

                                                                               tttttACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGa             <  1:719975/91‑1 (MQ=255)

                                                                                ttttACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGAc            <  1:698172/91‑1 (MQ=255)

                                                                                  ttACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGACTc          <  1:1914920/91‑1 (MQ=255)

                                                                                  ttACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGACTc          >  1:4028310/1‑91 (MQ=255)

                                                                                   tACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGACTCg         <  1:1400463/91‑1 (MQ=255)

                                                                                        tGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGACTCGAAata    <  1:1929443/91‑1 (MQ=255)

                                                                                          tCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGACTCGAAATATc  <  1:1092195/91‑1 (MQ=255)

GCTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGACTCGAAATATC  >  USA300TCH1516_ALE/2014092‑2014272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.