| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2019127 = | 106 (1.080) | 7 (0.080) | 6/142 | NT | 7.6% | intergenic (‑209/+132) | mgt/yraA | Monofunctional glycosyltransferase/Putative cysteine protease YraA |
| ? | USA300TCH1516_ALE | 2019176 = | 75 (0.860) | intergenic (‑258/+83) | mgt/yraA | Monofunctional glycosyltransferase/Putative cysteine protease YraA | |||||
ATTTTCGTTTGAAATGAAATATGGATTTTAGTTTTAATAAATGAATAACAAATAAAAGGTCGTCTCTATTGGCATTTAATAGGGATGGTCTTTTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2019224‑2019127‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttatttGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCGATAACCACAATACTTCTA > USA300TCH1516_ALE/2019176‑2019261 ATTTTCGTTTGAAATGAAATATGGATTTTAGTTTTAATAAATGAATAACAAATAAAAGGTCGTCTCTATTGGCATTTAATAGGGATGGTCT < 1:1205482/91‑1ATTTTCGTTTGAAATGAAATATGGATTTTAGTTTTAATAAATGAATAACAAATAAAAGGTCGTCTCTATTGGCATTTAATAGGGATGGTCT < 1:4066156/91‑1ATTTTCGTTTGAAATGAAATATGGATTTTAGTTTTAATAAATGAATAACAAATAAAAGGTCGTCTCTATTGGCATTTAATAGGGATGGTCT < 1:2760367/91‑1 TTTCGTTTGAAATGAAATATGGATTTTAGTTTTAATAAATGAATAACAAATAAAAGGTCGTCTCTATTGGCATTTAATAGGGATGGTCTTT < 1:269016/91‑1 TTTCGTTTGAAATGAAATATGGATTTTAGTTTTAATAAATGAATAACAAATAAAAGGTCGTCTCTATTGGCATTTAATAGGGATGGTCTTT < 1:3261713/91‑1 TTCGTTTGAAATGAAATATGGATTTTAGTTTTAATAAATGAATAACAAATAAAAGGTCGTCTCTATTGGCATTTAATAGGGATGGTCTTTT > 1:4109383/1‑91 CGTTTGAAATGAAATATGGATTTTAGTTTTAATAAATGAATAACAAATAAAAGGTCGTCTCTATTGGCATTTAATAGGGATGGTCTTTTAT > 1:1592853/1‑91 TTTGAAATGAAATATGGATTTTAGTTTTAATAAATGAATAACAAATAAAAGGTCGTCTCTATTGGCATTTAATAGGGATGGTCTTTTATTT < 1:1733754/91‑1 TTTGAAATGAAATATGGATTTTAGTTTTAATAAATGAATAACAAATAAAAGGTCGTCTCTATTGGCATTTAATAGGGATGGTCTTTTATTT < 1:2264393/91‑1 TTTGAAATGAAATATGGATTTTAGTTTTAATAAATGAATAACAAATAAAAGGTCGTCTCTATTGGCATTTAATAGGGATGGTCTTTTATTT > 1:3713685/1‑91 TTTGAAATGAAATATGGATTTTAGTTTTAATAAATGAATAACAAATAAAAGGTCGTCTCTATTGGCATTTAATAGGGATGGTCTTTTATTT > 1:3713614/1‑91 TTTGAAATGAAATATGGATTTTAGTTTTAATAAATGAATAACAAATAAAAGGTCGTCTCTATTGGCATTTAATAGGGATGGTCTTTTATTT > 1:3713599/1‑91 AGTTTTAATAAATGAATAACAAATAAAAGGTCGTCTCTATTGGCATTTAATAGGGATGGTCTTTTATTTGTTATTCATTTATTAAAACTAA > 1:3914170/1‑91 ATGAATAACAAATAAAAGGTCGTCTCTATTGGCATTTAATAGGGATGGTCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTT > 1:768221/1‑91 GAATAACAAATAAAAGGTCGTCTCTATTGGCATTTAATAGGGATGGTCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCA > 1:3127112/1‑91 GAATAACAAATAAAAGGTCGTCTCTATTGGCATTTAATAGGGATGGTCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCA > 1:3126881/1‑91 TAACAAATAAAAGGTCGTCTCTATTGGCATTTAATAGGGATGGTCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTT > 1:2397194/1‑91 AAAGGTCGTCTCTATTGGCATTTAATAGGGATGGTCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAA > 1:1003402/1‑91 CGTCTCTATTGGCATTTAATAGGGATGGTCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATAT > 1:1138573/1‑91 TTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCGATAACCACAATACTT < 1:3335902/91‑1 TTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCGATAACCACAATACTT < 1:1315080/91‑1 TATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCGATAACCACAATACTTCTA < 1:4065602/91‑1 ATTTTCGTTTGAAATGAAATATGGATTTTAGTTTTAATAAATGAATAACAAATAAAAGGTCGTCTCTATTGGCATTTAATAGGGATGGTCTTTTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2019224‑2019127‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttatttGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCGATAACCACAATACTTCTA > USA300TCH1516_ALE/2019176‑2019261 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |