BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2019127 =	106 (1.080)	7 (0.080)	6/142	NT	7.6%	intergenic (‑209/+132)	mgt/yraA	Monofunctional glycosyltransferase/Putative cysteine protease YraA
*	?	USA300TCH1516_ALE	2019176 =	75 (0.860)	7 (0.080)	6/142	NT	7.6%	intergenic (‑258/+83)	mgt/yraA	Monofunctional glycosyltransferase/Putative cysteine protease YraA

Only 100 of 135 total aligned reads displayed.

ATACTTACTTTTTTGTTTTTTGAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAA  >  USA300TCH1516_ALE/2019038‑2019217

   tagaagtattgtggttatcgattgttaaaatttatatattttcgtttgaaatgaaatatggattttagttttaataaatgaataacAAATa                                                                                        <  1:4065602‑M1/5‑1 (MQ=255)

   cttacttTTTTGTTTTTTGAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTataaaaata                                                                                        >  1:2340894/1‑91 (MQ=255)

    ttacttTTTTGTTTTTTGAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTataaaaataa                                                                                       <  1:1368658/91‑1 (MQ=255)

    ttacttTTTTGTTTTTTGAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTataaaaataa                                                                                       <  1:3802569/91‑1 (MQ=255)

     tacttTTTTGTTTTTTGAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATTATGTCAAATATTGTTATATTTTataaaaatatt                                                                                      >  1:2263189/1‑89 (MQ=255)

      acttTTTTGTTTTTTGAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTataaaaataaaa                                                                                     <  1:2108127/91‑1 (MQ=255)

      acttTTTTGTTTTTTGAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTataaaaataaaa                                                                                     <  1:2108726/91‑1 (MQ=255)

        ttttttgttttttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGa                                                                                   <  1:2034818/91‑1 (MQ=255)

         tttttgttttttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGAc                                                                                  <  1:941079/91‑1 (MQ=255)

          ttttgttttttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGAcc                                                                                 >  1:2200262/1‑91 (MQ=255)

           tttgttttttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCa                                                                                <  1:2442389/91‑1 (MQ=255)

           tttgttttttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCa                                                                                <  1:3886424/91‑1 (MQ=255)

           tttgttttttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCa                                                                                >  1:4063658/1‑91 (MQ=255)

             tgttttttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATc                                                                              <  1:3164701/91‑1 (MQ=255)

             tgtgttttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGAGCATc                                                                              <  1:3273183/87‑1 (MQ=255)

              gttttttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTACTCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATcc                                                                             >  1:3304847/1‑91 (MQ=255)

              gttttttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATcc                                                                             >  1:495806/1‑91 (MQ=255)

                tttttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCt                                                                           <  1:2905528/91‑1 (MQ=255)

                tttttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCt                                                                           <  1:2905576/91‑1 (MQ=255)

                 ttttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTa                                                                          >  1:3389135/1‑91 (MQ=255)

                 ttttgAAAAAATTATAGATAAATCATTGCAATTATAACTATTAATCCTGTCAAATATTGATATATTTTATAAAAATAAAAGACCATCCCTa                                                                          >  1:3307704/1‑91 (MQ=255)

                  tttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTAt                                                                         <  1:2560432/91‑1 (MQ=255)

                  tttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTAt                                                                         <  1:4041526/91‑1 (MQ=255)

                  tttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTAt                                                                         >  1:3688270/1‑91 (MQ=255)

                   ttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTAtt                                                                        >  1:3772790/1‑91 (MQ=255)

                   ttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTAtt                                                                        <  1:1145023/91‑1 (MQ=255)

                   ttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTAtt                                                                        <  1:3188966/91‑1 (MQ=255)

                   ttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTAtt                                                                        >  1:479223/1‑91 (MQ=255)

                   ttgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAACACCATCCCTAtt                                                                        <  1:3189020/91‑1 (MQ=255)

                    tgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTa                                                                       <  1:2286482/91‑1 (MQ=255)

                    tgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTa                                                                       >  1:1644807/1‑91 (MQ=255)

                    tgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTa                                                                       <  1:3020445/91‑1 (MQ=255)

                    tgAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTa                                                                       >  1:1894937/1‑91 (MQ=255)

                     gAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTACTaa                                                                      >  1:3733359/1‑91 (MQ=255)

                      aaaaaaTTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATCaaa                                                                     >  1:3210750/1‑91 (MQ=255)

                        aaaaTTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATg                                                                   >  1:251884/1‑91 (MQ=255)

                        aaaaTTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATg                                                                   >  1:2748903/1‑91 (MQ=255)

                          tcttATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGcc                                                                 <  1:1950848/89‑1 (MQ=255)

                          aaTTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAACTGcc                                                                 >  1:3459116/1‑91 (MQ=255)

                            ttATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCaa                                                               <  1:2203209/91‑1 (MQ=255)

                            ttATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCaa                                                               >  1:1814829/1‑91 (MQ=255)

                              ataGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATa                                                             >  1:2328764/1‑91 (MQ=255)

                               taGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATag                                                            >  1:1721091/1‑91 (MQ=255)

                               taGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATag                                                            >  1:1796961/1‑91 (MQ=255)

                                aGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATaga                                                           >  1:1433870/1‑91 (MQ=255)

                                 gATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATagag                                                          >  1:2729972/1‑91 (MQ=255)

                                 gATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATagag                                                          >  1:2284930/1‑91 (MQ=255)

                                 gATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATagag                                                          >  1:70019/1‑91 (MQ=255)

                                  aTAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAgaga                                                         <  1:18838/91‑1 (MQ=255)

                                    aaaTCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAgacg                                                       <  1:395647/91‑1 (MQ=255)

                                      gtCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAgacgac                                                     <  1:2101543/90‑1 (MQ=255)

                                       tCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGAcc                                                    <  1:2440013/91‑1 (MQ=255)

                                         aTTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCtt                                                  <  1:3502970/91‑1 (MQ=255)

                                          tttcgtttgaaatgaaatatggattttagttttaataaatgaataacAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCttt                                                 >  1:1003402‑M1/48‑91 (MQ=255)

                                            gCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTa                                               <  1:2742376/91‑1 (MQ=255)

                                               aTTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTAttt                                            >  1:3265538/1‑91 (MQ=255)

                                               aTTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTAttt                                            <  1:390045/91‑1 (MQ=255)

                                                ttttAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTg                                           <  1:2959372/91‑1 (MQ=255)

                                                   aaatgaaatatggattttagttttaataaatgaataacAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTa                                        >  1:2397194‑M1/39‑91 (MQ=255)

                                                    aaaTATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTAt                                       >  1:764658/1‑91 (MQ=255)

                                                      tgaaatatggattttagttttaataaatgaataacAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTc                                     >  1:3126881‑M1/36‑91 (MQ=255)

                                                      tgaaatatggattttagttttaataaatgaataacAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTc                                     >  1:3127112‑M1/36‑91 (MQ=255)

                                                      atatTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTTTTTTTTAttt                                     >  1:3670766/1‑90 (MQ=255)

                                                        aaatatggattttagttttaataaatgaataacAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCAt                                   >  1:768221‑M1/34‑91 (MQ=255)

                                                         ttAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCAtt                                  >  1:419846/1‑91 (MQ=255)

                                                          tAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCAttt                                 >  1:7300/1‑91 (MQ=255)

                                                           aaTCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATtta                                <  1:108278/91‑1 (MQ=255)

                                                             tCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATttatt                              >  1:1542949/1‑91 (MQ=255)

                                                             tCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATttatt                              >  1:2995268/1‑91 (MQ=255)

                                                             tCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATttatt                              >  1:2995403/1‑91 (MQ=255)

                                                               aTGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTaa                            <  1:3240012/91‑1 (MQ=255)

                                                                tGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTaaa                           >  1:935338/1‑91 (MQ=255)

                                                                 gTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTaaaa                          <  1:3143891/91‑1 (MQ=255)

                                                                     aaTATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTaa                      <  1:2996436/91‑1 (MQ=255)

                                                                      atatTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTaaa                     <  1:1113566/91‑1 (MQ=255)

                                                                      atatTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTaaa                     <  1:1696050/91‑1 (MQ=255)

                                                                        atTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAAt                   <  1:1777356/91‑1 (MQ=255)

                                                                           gTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCa                >  1:2379975/1‑91 (MQ=255)

                                                                           gTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCa                >  1:131065/1‑91 (MQ=255)

                                                                            ttATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCat               <  1:2404562/91‑1 (MQ=255)

                                                                            ttATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCat               <  1:827924/91‑1 (MQ=255)

                                                                             tataTTTTATAAAGATAAAAGACCATCCCTATTAAATGCCAATCGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCata              <  1:4149118/91‑1 (MQ=255)

                                                                             tataTTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCata              >  1:2216878/1‑91 (MQ=255)

                                                                             tataTTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCata              >  1:4019044/1‑91 (MQ=255)

                                                                                atTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAGATCCATattt           <  1:2649488/91‑1 (MQ=255)

                                                                                atTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATattt           <  1:2648988/91‑1 (MQ=255)

                                                                                atTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATattt           <  1:3996469/91‑1 (MQ=255)

                                                                                atTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATattt           <  1:2649487/91‑1 (MQ=255)

                                                                                atTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATattt           <  1:1377017/91‑1 (MQ=255)

                                                                                   ttATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATatttcat        >  1:1195942/1‑91 (MQ=255)

                                                                                     ataaaaataaaaGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATatttcattt      <  1:337874/91‑1 (MQ=255)

                                                                                     ataaaaataaaaGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATatttcattt      <  1:2052680/91‑1 (MQ=255)

                                                                                       aaaaataaaaGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATAtttcatttca    >  1:2397865/1‑91 (MQ=255)

                                                                                       aaaaataaaaGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATAtttcatttca    <  1:1543098/91‑1 (MQ=255)

                                                                                       aaaaataaaaGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATAtttcatttca    >  1:3391097/1‑91 (MQ=255)

                                                                                        aaaataaaaGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCaa   <  1:3182714/91‑1 (MQ=255)

                                                                                         AAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCaaa  >  1:3713614‑M1/1‑91 (MQ=255)

                                                                                         AAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCaaa  >  1:3713599‑M1/1‑91 (MQ=255)

                                                                                         AAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCaaa  <  1:2264393‑M1/91‑1 (MQ=255)

                                                                                         AAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCaaa  <  1:1733754‑M1/91‑1 (MQ=255)

ATACTTACTTTTTTGTTTTTTGAAAAAATTATAGATAAATCATTGCAATTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAA  >  USA300TCH1516_ALE/2019038‑2019217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.