BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2019127 =	106 (1.080)	7 (0.080)	6/142	NT	7.6%	intergenic (‑209/+132)	mgt/yraA	Monofunctional glycosyltransferase/Putative cysteine protease YraA
*	?	USA300TCH1516_ALE	2019176 =	75 (0.860)	7 (0.080)	6/142	NT	7.6%	intergenic (‑258/+83)	mgt/yraA	Monofunctional glycosyltransferase/Putative cysteine protease YraA

Only 100 of 114 total aligned reads displayed.

TTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCGATAACCACAATACTTCTATTGTA  >  USA300TCH1516_ALE/2019086‑2019266

ttttAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTg                                                                                            <  1:2959372/91‑1 (MQ=255)

ttttAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTg                                                                                            <  1:2959545/91‑1 (MQ=255)

  ttAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGtt                                                                                          <  1:1666073/91‑1 (MQ=255)

   aaatgaaatatggattttagttttaataaatgaataacAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTa                                                                                         >  1:2397194‑M1/39‑91 (MQ=255)

    aaaTATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTAt                                                                                        >  1:764658/1‑91 (MQ=255)

      tgaaatatggattttagttttaataaatgaataacAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTc                                                                                      >  1:3126881‑M1/36‑91 (MQ=255)

      tgaaatatggattttagttttaataaatgaataacAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTc                                                                                      >  1:3127112‑M1/36‑91 (MQ=255)

      atatTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTc                                                                                      >  1:3670799/1‑91 (MQ=255)

        atTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCAt                                                                                    <  1:2400167/91‑1 (MQ=255)

        aaatatggattttagttttaataaatgaataacAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCAt                                                                                    >  1:768221‑M1/34‑91 (MQ=255)

         ttAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCAtt                                                                                   >  1:419846/1‑91 (MQ=255)

           aaTCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATtta                                                                                 <  1:108278/91‑1 (MQ=255)

             tCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATttatt                                                                               >  1:2995403/1‑91 (MQ=255)

             tCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATttatt                                                                               >  1:2995268/1‑91 (MQ=255)

             tCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATttatt                                                                               >  1:2997734/1‑91 (MQ=255)

               aTGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTaa                                                                             <  1:3240012/91‑1 (MQ=255)

                tGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTaaa                                                                            >  1:935338/1‑91 (MQ=255)

                 gTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTaaaa                                                                           <  1:3143891/91‑1 (MQ=255)

                     agttttaataaatgaataacaaataaaaggtcgtctctattggcatttaatagggatggtcttttatttGTTATTCATTTATTAAAACTaa                                                                       >  1:3914170‑M2/70‑91 (MQ=255)

                     aaTATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTaa                                                                       <  1:2996436/91‑1 (MQ=255)

                      atatTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTaaa                                                                      <  1:1113566/91‑1 (MQ=255)

                        atTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAAt                                                                    <  1:1777356/91‑1 (MQ=255)

                           gTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCa                                                                 >  1:2379975/1‑91 (MQ=255)

                           gTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCa                                                                 >  1:131065/1‑91 (MQ=255)

                            ttATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCat                                                                <  1:827924/91‑1 (MQ=255)

                            ttATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCat                                                                <  1:2404562/91‑1 (MQ=255)

                             tataTTTTATAAAGATAAAAGACCATCCCTATTAAATGCCAATCGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCata                                                               <  1:4149118/91‑1 (MQ=255)

                             tataTTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCata                                                               >  1:4019044/1‑91 (MQ=255)

                             tataTTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCata                                                               >  1:2216878/1‑91 (MQ=255)

                                atgaataacaaataaaaggtcgtctctattggcatttaatagggatggtcttttatttGTTATTCATTTATTAAAACTAAAATCCATattt                                                            >  1:768221‑M2/59‑91 (MQ=255)

                                atTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAGATCCATattt                                                            <  1:2649488/91‑1 (MQ=255)

                                atTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATattt                                                            <  1:3996469/91‑1 (MQ=255)

                                atTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATattt                                                            <  1:1377017/91‑1 (MQ=255)

                                atTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATattt                                                            <  1:2648988/91‑1 (MQ=255)

                                atTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATattt                                                            <  1:2649487/91‑1 (MQ=255)

                                  gaataacaaataaaaggtcgtctctattggcatttaatagggatggtcttttatttGTTATTCATTTATTAAAACTAAAATCCATatttca                                                          >  1:3126881‑M2/57‑91 (MQ=255)

                                  gaataacaaataaaaggtcgtctctattggcatttaatagggatggtcttttatttGTTATTCATTTATTAAAACTAAAATCCATatttca                                                          >  1:3127112‑M2/57‑91 (MQ=255)

                                   ttATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATatttcat                                                         >  1:1195942/1‑91 (MQ=255)

                                    tataAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATatttcatt                                                        <  1:486188/91‑1 (MQ=255)

                                     taacaaataaaaggtcgtctctattggcatttaatagggatggtcttttatttGTTATTCATTTATTAAAACTAAAATCCATatttcattt                                                       >  1:2397194‑M2/54‑91 (MQ=255)

                                     ataaaaataaaaGACCATCCCTATTAAATGCCAGTAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATatttcattt                                                       <  1:3401177/91‑1 (MQ=255)

                                     ataaaaataaaaGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATatttcattt                                                       >  1:4033959/1‑91 (MQ=255)

                                     ataaaaataaaaGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATatttcattt                                                       <  1:2052680/91‑1 (MQ=255)

                                     ataaaaataaaaGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATatttcattt                                                       <  1:337874/91‑1 (MQ=255)

                                       aaaaataaaaGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATAtttcatttca                                                     <  1:3133662/91‑1 (MQ=255)

                                       aaaaataaaaGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATAtttcatttca                                                     <  1:1543098/91‑1 (MQ=255)

                                       aaaaataaaaGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATAtttcatttca                                                     >  1:2397865/1‑91 (MQ=255)

                                       aaaaataaaaGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATAtttcatttca                                                     >  1:3391097/1‑91 (MQ=255)

                                        aaaataaaaGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCaa                                                    <  1:3182714/91‑1 (MQ=255)

                                         AAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCaaa                                                   <  1:1733754‑M1/91‑1 (MQ=255)

                                         AAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCaaa                                                   >  1:3713599‑M1/1‑91 (MQ=255)

                                         AAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCaaa                                                   <  1:2264393‑M1/91‑1 (MQ=255)

                                         AAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCaaa                                                   >  1:3713685‑M1/1‑91 (MQ=255)

                                         AAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCaaa                                                   >  1:3713614‑M1/1‑91 (MQ=255)

                                           ATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACg                                                 >  1:1592853‑M1/1‑91 (MQ=255)

                                              aaaggtcgtctctattggcatttaatagggatggtcttttatttGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGaaa                                              >  1:1003402‑M2/45‑91 (MQ=255)

                                              AAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGaaa                                              <  1:269016‑M1/91‑1 (MQ=255)

                                              AAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGaaa                                              <  1:3261713‑M1/91‑1 (MQ=255)

                                                AGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAat                                            <  1:4066156‑M1/91‑1 (MQ=255)

                                                AGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAat                                            <  1:2760367‑M1/91‑1 (MQ=255)

                                                  aCCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAatat                                          <  1:1651848/91‑1 (MQ=255)

                                                  aCCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAatat                                          <  1:3069303/91‑1 (MQ=255)

                                                   ccATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAatata                                         >  1:588011/1‑91 (MQ=255)

                                                   ccATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAatata                                         <  1:956006/91‑1 (MQ=255)

                                                   ccATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAatata                                         <  1:1583900/91‑1 (MQ=255)

                                                    cgtctctattggcatttaatagggatggtcttttatttGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAatatat                                        >  1:1138573‑M2/39‑91 (MQ=255)

                                                    cATCCCTATTAAATGCCAATAGAGACGACCTTCTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTACAAACGAAAatatat                                        <  1:3542465/91‑1 (MQ=255)

                                                     aTCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAAtatata                                       >  1:919647/1‑91 (MQ=255)

                                                      tCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATaa                                      >  1:4043836/1‑91 (MQ=255)

                                                       cccTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATaaa                                     <  1:3835576/91‑1 (MQ=255)

                                                       cccTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATaaa                                     <  1:2794236/91‑1 (MQ=255)

                                                        ccTATTAAATGCCAATAGAGACGACCTTTTATGTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAAt                                    <  1:3530692/91‑1 (MQ=255)

                                                          tATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAAttt                                  >  1:1171146/1‑91 (MQ=255)

                                                          tATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAAttt                                  >  1:3682182/1‑91 (MQ=255)

                                                           aTTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAAtttt                                 >  1:3198014/1‑91 (MQ=255)

                                                           aTTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAAtttt                                 <  1:1452708/91‑1 (MQ=255)

                                                           aTTAAATGCCAACAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAAtttt                                 >  1:3197904/1‑91 (MQ=255)

                                                            ttAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTa                                >  1:140640/1‑91 (MQ=255)

                                                              aaaTGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAAc                              <  1:4119366/91‑1 (MQ=255)

                                                              aaaTGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAAc                              <  1:4119339/91‑1 (MQ=255)

                                                                aTGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACaa                            >  1:1636901/1‑91 (MQ=255)

                                                                aTGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACaa                            >  1:1636966/1‑91 (MQ=255)

                                                                 tGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAAt                           <  1:1137397/91‑1 (MQ=255)

                                                                 tGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAAt                           <  1:3262253/91‑1 (MQ=255)

                                                                 tGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAAt                           >  1:3083845/1‑91 (MQ=255)

                                                                  gCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATc                          >  1:2048856/1‑91 (MQ=255)

                                                                   ccAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCg                         >  1:447939/1‑91 (MQ=255)

                                                                   ccAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCg                         <  1:1455046/91‑1 (MQ=255)

                                                                    cAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCGa                        <  1:1957608/91‑1 (MQ=255)

                                                                    cAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCGa                        >  1:3207701/1‑91 (MQ=255)

                                                                       tAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCGATaa                     >  1:2588171/1‑91 (MQ=255)

                                                                         gagaCGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCGATAAcc                   <  1:3825807/91‑1 (MQ=255)

                                                                            acgacCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCGATAACcaca                <  1:2143005/91‑1 (MQ=255)

                                                                            acgacCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCGATAACcaca                <  1:3663359/91‑1 (MQ=255)

                                                                             cgacCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCGATAACCACaa               >  1:3080434/1‑91 (MQ=255)

                                                                              gacCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCGATAACCACAAt              <  1:1506284/91‑1 (MQ=255)

                                                                               acCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCGATAACCACAATa             >  1:3584446/1‑91 (MQ=255)

                                                                                  ttttatttGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCGATAACCACAATACtt          <  1:1315080‑M2/83‑1 (MQ=255)

                                                                                     tatttGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCGATAACCACAATACTTCTa       <  1:4065602‑M2/86‑1 (MQ=255)

                                                                                          gTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCGATAACCACAATACTTCTATTGTa  >  1:1173518/1‑91 (MQ=255)

TTTTAAATATTAATCATGTCAAATATTGTTATATTTTATAAAAATAAAAGACCATCCCTATTAAATGCCAATAGAGACGACCTTTTATTTGTTATTCATTTATTAAAACTAAAATCCATATTTCATTTCAAACGAAAATATATAAATTTTAACAATCGATAACCACAATACTTCTATTGTA  >  USA300TCH1516_ALE/2019086‑2019266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.