| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2028558 | 111 (1.130) | 10 (0.120) | 6/140 | NT | 9.3% | coding (87/702 nt) | USA300HOU_RS10230 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 2028574 | 98 (1.140) | coding (71/702 nt) | USA300HOU_RS10230 | hypothetical protein | |||||
TATCCAAAACGCCAAAAGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2028459‑2028558‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaatttttACTACATATTTTTTGAAAAAATTGGCTTTTTACTCGTTCTATTATTGGGATGTGTATTAGTTTATGTAGGATATCTTTATTTTCATAAAA < USA300TCH1516_ALE/2028574‑2028485 TATCCAAAACGCCAAAAGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAG < 1:329985/91‑1 ATCCAAAACGCCAAAAGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGC < 1:110020/91‑1 ATCCAAAACGCCAAAAGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGC > 1:3435229/1‑91 ATCCAAAACGCCAAAAGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGC < 1:2132785/91‑1 TCCAAAACGCCAAAAGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCC > 1:1701770/1‑91 TCCAAAACGCCAAAAGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCC < 1:3756237/91‑1 CCAAAACGCCAAAAGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCA > 1:3522881/1‑91 CAAAACGCCAAAAGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAA > 1:1392702/1‑91 CAAAACGCCAAAAGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAA > 1:506058/1‑91 AAACGCCAAAAGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCTCAATAATAGAAGGAGTAAAAAGCCAATT > 1:4004796/1‑91 AAACGCCAAAAGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATT < 1:703323/91‑1 AAACGCCAAAAGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATT > 1:35445/1‑91 AAACGCCAAAAGACCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATT > 1:3203533/1‑91 ACGCCAAAAGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTT > 1:147973/1‑91 ATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTACTACATATTTTTTGA < 1:427994/91‑1 ATTTTATGAAAATAAAGATAACCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTACTACATATTTTTTGA < 1:1863937/91‑1 TTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATATTAGAACGAGTAAAAAGCCAATTTTTACTACATATTTTTTGAA < 1:1586180/91‑1 TTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTACTACATATTTTTTGAA < 1:1954779/91‑1 TTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTACTACATATTTTTTGAA < 1:1954505/91‑1 TTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTACTACATATTTTTTGAA < 1:1954485/91‑1 TTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTACTACATATTTTTTGAAAA < 1:545679/91‑1 GAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAATCCAATTTTTACTACATATTTTTTGAAAAAATT < 1:204835/91‑1 AAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTACTACATATTTTTTGAAAAAATTGG < 1:3625759/91‑1 AATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTACTACATATTTTTTGAAAAAATTGGC < 1:4121951/91‑1 GCCAATTTTTACTACATATTTTTTGAAAAAATTGGCTTTTTACTCGTTCTATTATTGGGATGTGTATTAGTTTATGTAGGATATCTTTATT > 1:808166/1‑91 GCCAATTTTTACTACATATTTTTTGAAAAAATTGGCTTTTTACTCGTTCTATTATTGGGATGTGTATTAGTTTATGTAGGATATCTTTATT < 1:264334/91‑1 GCCAATTTTTACTACATATTTTTTGAAAAAATTGGCTTTTTACTCGTTCTATTATTGGGATGTGTATTAGTTTATGTAGGATATCTTTATT < 1:263030/91‑1 CCAATTTTTACTACATATTTTTTGAAAAAATTGGCTTTTTACTCGTTCTATTATTGGGATGTGTATTAGTTTATGTAGGATATCTTTATTT < 1:3775923/91‑1 CCAATTTTTACTACATATTTTTTGAAAAAATTGGCTTTTTACTCGTTCTATTATTGGGATGTGTATTAGTTTATGTAGGATATCTTTATTT < 1:2138401/91‑1 TTTTACTACATATTTTTTGAAAAAATTGGCTTTTTACTCGTTCTATTATTGGGATGTGTATTAGTTTATGTAGGATATCTTTATTTTCATA > 1:2057827/1‑91 TTTACTACATATTTTTTGAAAAAATTGGCTTTTTACTCGTTCTATTATTGGGATGTGTATTAGTTTATGTAGGATATCTTTATTTTCATAA < 1:102611/91‑1 TTACTACATGTTTTTTGAAAAAATTGGCTTTTTACTCGTTCTATTATTGGGATGTGTATTAGTTTATGTAGGATATCTTTATTTTCATAAA < 1:3966720/91‑1 TTACTACATCTTTTTTGAAAAAATTGGCTTTTTACTCGTTCTATTATTGGGATGTGTATTAGTTTATGTAGGATATCTTTATTTTCATAAA < 1:3966405/91‑1 TACTACATATTTTTTGAAAAAATTGGCTTTTTACTCGTTCTATTATTGGGATGTGTATTAGTTTATGTAGGATATCTTTATTTTCATAAAA > 1:2788977/1‑91 TATCCAAAACGCCAAAAGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2028459‑2028558‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaatttttACTACATATTTTTTGAAAAAATTGGCTTTTTACTCGTTCTATTATTGGGATGTGTATTAGTTTATGTAGGATATCTTTATTTTCATAAAA < USA300TCH1516_ALE/2028574‑2028485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |