BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2028558	111 (1.130)	10 (0.120)	6/140	NT	9.3%	coding (87/702 nt)	USA300HOU_RS10230	hypothetical protein
*	?	USA300TCH1516_ALE	= 2028574	98 (1.140)	10 (0.120)	6/140	NT	9.3%	coding (71/702 nt)	USA300HOU_RS10230	hypothetical protein

Only 100 of 140 total aligned reads displayed.

ATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCATGTTTCGCCGCCTTTCTATG  >  USA300TCH1516_ALE/2028484‑2028663

  tttATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAAGATGTAGTaa                                                                                         <  1:3966405‑M2/91‑3 (MQ=255)

  tttATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAACATGTAGTaa                                                                                         <  1:3966720‑M2/91‑3 (MQ=255)

   ttATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTaaa                                                                                        <  1:102611‑M2/91‑4 (MQ=255)

    tATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTaaaa                                                                                       >  1:2057827‑M2/1‑87 (MQ=255)

         aaaTAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTaaaaattgg                                                                                  <  1:3775923‑M2/91‑10 (MQ=255)

          aaTAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTaaaaattggc                                                                                 >  1:808166‑M2/1‑81 (MQ=255)

          aaTAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTaaaaattggc                                                                                 <  1:264334‑M2/91‑11 (MQ=255)

            tAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCaa                                                                               >  1:273261/1‑91 (MQ=255)

            tAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTATCAAAAAATATGTAGTAAAAATTGGCaa                                                                               >  1:2933235/1‑91 (MQ=255)

               aGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCaataa                                                                            >  1:3663774/1‑91 (MQ=255)

               aGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCaataa                                                                            <  1:127264/91‑1 (MQ=255)

               aGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCaataa                                                                            >  1:1455542/1‑91 (MQ=255)

               aGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCaataa                                                                            >  1:284682/1‑91 (MQ=255)

                gATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCaataat                                                                           <  1:2763845/91‑1 (MQ=255)

                 atatCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATc                                                                          <  1:2420/91‑1 (MQ=255)

                 atatCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATc                                                                          <  1:2100613/91‑1 (MQ=255)

                  tatCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCa                                                                         <  1:3661097/91‑1 (MQ=255)

                   atCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCAt                                                                        >  1:1071976/1‑91 (MQ=255)

                    tCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCAtt                                                                       <  1:335309/91‑1 (MQ=255)

                    tCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCAtt                                                                       >  1:3346316/1‑91 (MQ=255)

                      cTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTaa                                                                     <  1:2961851/91‑1 (MQ=255)

                      cTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTaa                                                                     >  1:207917/1‑91 (MQ=255)

                            aaaCTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGt                                                               >  1:2693817/1‑91 (MQ=255)

                            aaaCTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGt                                                               <  1:2753909/91‑1 (MQ=255)

                            aaaCTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGt                                                               <  1:3561942/91‑1 (MQ=255)

                               cTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTaaa                                                            <  1:3240682/91‑1 (MQ=255)

                                tAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTaaaa                                                           >  1:2718172/1‑91 (MQ=255)

                                  aTACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAAt                                                         >  1:3025852/1‑91 (MQ=255)

                                  aTACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAAt                                                         >  1:2575209/1‑91 (MQ=255)

                                    acacATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGa                                                       <  1:3561695/91‑1 (MQ=255)

                                    acacATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGa                                                       <  1:3562029/91‑1 (MQ=255)

                                    acacATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGa                                                       >  1:1054278/1‑91 (MQ=255)

                                    acacATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGa                                                       >  1:2302245/1‑91 (MQ=255)

                                    acacATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGa                                                       >  1:477918/1‑91 (MQ=255)

                                    acacATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGa                                                       <  1:3994635/91‑1 (MQ=255)

                                     cacaTCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGAt                                                      <  1:1275390/91‑1 (MQ=255)

                                       caTCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCa                                                    >  1:3608775/1‑91 (MQ=255)

                                          cccAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACa                                                 <  1:1763327/91‑1 (MQ=255)

                                           ccAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACAt                                                >  1:544561/1‑91 (MQ=255)

                                           ccAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACAt                                                >  1:544453/1‑91 (MQ=255)

                                           ccAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACAt                                                >  1:433035/1‑91 (MQ=255)

                                           ccAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACAt                                                >  1:3605568/1‑91 (MQ=255)

                                            cAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACAtt                                               <  1:1717454/91‑1 (MQ=255)

                                             aataatAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACAttt                                              >  1:3837622/1‑91 (MQ=255)

                                              ataataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTg                                             >  1:2304200/1‑91 (MQ=255)

                                              ataataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTg                                             >  1:257105/1‑91 (MQ=255)

                                              ataataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTg                                             >  1:4000075/1‑91 (MQ=255)

                                               taataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGc                                            <  1:1738668/91‑1 (MQ=255)

                                               taataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGc                                            >  1:2826809/1‑91 (MQ=255)

                                               taataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGc                                            >  1:3563743/1‑91 (MQ=255)

                                                aataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCTTTAATGCAGTAAAAATGATCAACATTTGCg                                           >  1:2843892/1‑91 (MQ=255)

                                                aataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCg                                           >  1:2843893/1‑91 (MQ=255)

                                                 ataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGt                                          >  1:1938181/1‑91 (MQ=255)

                                                 ataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGt                                          >  1:3625443/1‑91 (MQ=255)

                                                  taGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGtt                                         >  1:1940751/1‑91 (MQ=255)

                                                  taGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGtt                                         <  1:2375174/91‑1 (MQ=255)

                                                    gAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGa                                       <  1:1998159/91‑1 (MQ=255)

                                                    gAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGa                                       <  1:2900865/91‑1 (MQ=255)

                                                    gAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGa                                       <  1:737998/91‑1 (MQ=255)

                                                     aaCGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGat                                      >  1:1247579/1‑91 (MQ=255)

                                                      aCGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGata                                     >  1:2816480/1‑91 (MQ=255)

                                                      aCGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGata                                     <  1:1914930/91‑1 (MQ=255)

                                                      aCGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGata                                     <  1:1211487/91‑1 (MQ=255)

                                                      aCGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGata                                     <  1:1811368/91‑1 (MQ=255)

                                                       cGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGatat                                    >  1:80918/1‑91 (MQ=255)

                                                       cGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGatat                                    >  1:3814938/1‑91 (MQ=255)

                                                        gAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGatata                                   <  1:400298/91‑1 (MQ=255)

                                                             aaaaGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATAttt                              >  1:2270146/1‑91 (MQ=255)

                                                             aaaaGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATAttt                              >  1:2270545/1‑91 (MQ=255)

                                                                 gCCAATTTTTTCAAAAAATATGTAGTaaaaattggctttttactcgttctattattgggatgtgtattagtttatgtaggatatctttatt                          <  1:4121951‑M2/91‑66 (MQ=255)

                                                                  ccAATTTTTTCAAAAAATATGTAGTaaaaattggctttttactcgttctattattgggatgtgtattagtttatgtaggatatctttattt                         <  1:3625759‑M2/91‑67 (MQ=255)

                                                                  ccAATTTTTTCAAAAAATATGTAGTAAAAATAGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTtgtgtg                         <  1:3623221/91‑1 (MQ=255)

                                                                   cAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTgtgtgt                        <  1:2865334/91‑1 (MQ=255)

                                                                   cAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTgtgtgt                        >  1:1871868/1‑91 (MQ=255)

                                                                   cAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTgtgtgt                        >  1:2132931/1‑91 (MQ=255)

                                                                    aaTTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTc                       <  1:4132326/91‑1 (MQ=255)

                                                                    aaTTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTc                       >  1:2481052/1‑91 (MQ=255)

                                                                    aaTTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTc                       >  1:2481469/1‑91 (MQ=255)

                                                                    aaTTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTc                       >  1:2840462/1‑91 (MQ=255)

                                                                     aTTTTTTCAAAAAATATGTAGTAAAAATTTGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCa                      <  1:3330060/91‑1 (MQ=255)

                                                                     aTTTTTTCAAAAAATATGTAGTAAAAATTGGCTATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATGTATATTTGTGTGTCa                      <  1:3538637/91‑1 (MQ=255)

                                                                      ttttttCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCAt                     >  1:1598341/1‑91 (MQ=255)

                                                                       tttttCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCATg                    >  1:2595532/1‑91 (MQ=255)

                                                                          ttCAAAAAATATGTAGTaaaaattggctttttactcgttctattattgggatgtgtattagtttatgtaggatatctttattttcataaaa                 <  1:1954779‑M2/91‑75 (MQ=255)

                                                                          ttCAAAAAATATGTAGTaaaaattggctttttactcgttctattattgggatgtgtattagtttatgtaggatatctttattttcataaaa                 <  1:1954485‑M2/91‑75 (MQ=255)

                                                                           tCAAAAAATATGTAGTaaaaattggctttttactcgttctattattgggatgtgtattagtttatgtaggatatctttattttcataaaat                <  1:427994‑M2/91‑76 (MQ=255)

                                                                           tCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAGAATGATCAACATTTGCGTTGATATATATTTGTGTGTCATGTTTc                <  1:1603999/91‑1 (MQ=255)

                                                                           tCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCATGTTTc                <  1:1604197/91‑1 (MQ=255)

                                                                            cAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCATGTTTcg               >  1:935597/1‑91 (MQ=255)

                                                                              aaaaaTATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCATGTTTcgcc             >  1:2281678/1‑91 (MQ=255)

                                                                                   tatGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCATGTTTCGCCGCCtt        >  1:2052018/1‑91 (MQ=255)

                                                                                   tatGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCATGTTTCGCCGCCtt        <  1:2707369/91‑1 (MQ=255)

                                                                                      gtagtaAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCATGTTTCGCCGCCTTTCt     >  1:1108053/1‑91 (MQ=255)

                                                                                       tagtaAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCATGTTTCGCCGCCTTTCTa    <  1:2990468/91‑1 (MQ=255)

                                                                                       tagtaAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCATGTTTCGCCGCCTTTCTa    >  1:3275037/1‑91 (MQ=255)

                                                                                       tagtaAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCATGTTTCGCCGCCTTTCTa    >  1:3274991/1‑91 (MQ=255)

                                                                                       tagtaAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCATGTTTCGCCGCCTTTCTa    >  1:894172/1‑91 (MQ=255)

                                                                                        agtaAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCATGTTTCGCCGCCTTTCTAt   <  1:1778271/91‑1 (MQ=255)

                                                                                         gtaAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCATGTTTCGCCGCCTTTCTATg  >  1:2476765/1‑91 (MQ=255)

                                                                                         gtaAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCATGTTTCGCCGCCTTTCTATg  >  1:1522961/1‑91 (MQ=255)

ATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCATGTTTCGCCGCCTTTCTATG  >  USA300TCH1516_ALE/2028484‑2028663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.