BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2028558	111 (1.130)	10 (0.120)	6/140	NT	9.3%	coding (87/702 nt)	USA300HOU_RS10230	hypothetical protein
*	?	USA300TCH1516_ALE	= 2028574	98 (1.140)	10 (0.120)	6/140	NT	9.3%	coding (71/702 nt)	USA300HOU_RS10230	hypothetical protein

Only 100 of 162 total aligned reads displayed.

GCCAAAAGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCATGTTT  >  USA300TCH1516_ALE/2028469‑2028648

gCCAAAAGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAAtttttt                                                                                           <  1:1137664/91‑1 (MQ=255)

 ccAAAAGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTc                                                                                          >  1:336364/1‑91 (MQ=255)

    aaaGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCaaa                                                                                       >  1:2382573/1‑91 (MQ=255)

    aaaGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCaaa                                                                                       >  1:1509040/1‑91 (MQ=255)

            cGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATgt                                                                               <  1:2731108/91‑1 (MQ=255)

            cGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTCTCAAAAAATATgt                                                                               >  1:4145290/1‑91 (MQ=255)

              tATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGGGTAAAAAGCCAATTTTTTCAAAAAATATgtag                                                                             <  1:80248/91‑1 (MQ=255)

              tATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATgtag                                                                             <  1:714660/91‑1 (MQ=255)

              tATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATgtag                                                                             <  1:3126325/91‑1 (MQ=255)

               aTTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATgtagt                                                                            <  1:407663/91‑1 (MQ=255)

                ttttATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATATTAGAACGAGTAAAAAGCCAATTTTTactacatattttttgaa                                                                           <  1:1586180‑M1/91‑18 (MQ=255)

                ttttATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTactacatattttttgaa                                                                           <  1:1954505‑M1/91‑18 (MQ=255)

                ttttATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTactacatattttttgaa                                                                           <  1:1954485‑M1/91‑18 (MQ=255)

                ttttATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTa                                                                           >  1:2788977‑M2/1‑90 (MQ=255)

                 tttATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAACATGTAGTaa                                                                          <  1:3966720‑M2/91‑3 (MQ=255)

                  ttATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTactacatattttttgaaaa                                                                         <  1:545679‑M1/91‑20 (MQ=255)

                  ttATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTaaa                                                                         <  1:102611‑M2/91‑4 (MQ=255)

                   tATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTaaaa                                                                        >  1:2057827‑M2/1‑87 (MQ=255)

                        aaaTAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTactacatattttttgaaaaaattgg                                                                   <  1:3625759‑M1/91‑26 (MQ=255)

                        aaaTAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTaaaaattgg                                                                   <  1:3775923‑M2/91‑10 (MQ=255)

                        aaaTAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTaaaaattgg                                                                   <  1:2138401‑M2/91‑10 (MQ=255)

                         aaTAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTactacatattttttgaaaaaattggc                                                                  <  1:4121951‑M1/91‑27 (MQ=255)

                         aaTAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTaaaaattggc                                                                  <  1:263030‑M2/91‑11 (MQ=255)

                         aaTAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTaaaaattggc                                                                  >  1:808166‑M2/1‑81 (MQ=255)

                           tAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCaa                                                                >  1:2288904/1‑91 (MQ=255)

                           tAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCaa                                                                >  1:273261/1‑91 (MQ=255)

                           tAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTATCAAAAAATATGTAGTAAAAATTGGCaa                                                                >  1:2933235/1‑91 (MQ=255)

                            aaaGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCaat                                                               >  1:3266656/1‑91 (MQ=255)

                              aGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCaataa                                                             <  1:3646023/91‑1 (MQ=255)

                              aGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCaataa                                                             <  1:127264/91‑1 (MQ=255)

                              aGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCaataa                                                             >  1:284635/1‑91 (MQ=255)

                              aGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCaataa                                                             >  1:284682/1‑91 (MQ=255)

                              aGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCaataa                                                             >  1:3663774/1‑91 (MQ=255)

                               gATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCaataat                                                            >  1:846438/1‑91 (MQ=255)

                                atatCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATc                                                           <  1:2100613/91‑1 (MQ=255)

                                  atCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCAt                                                         >  1:1071976/1‑91 (MQ=255)

                                   tCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCAtt                                                        >  1:3346316/1‑91 (MQ=255)

                                     cTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTaa                                                      >  1:207917/1‑91 (MQ=255)

                                        cATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGc                                                   <  1:1929085/91‑1 (MQ=255)

                                           aaaCTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGt                                                <  1:3561942/91‑1 (MQ=255)

                                           aaaCTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGt                                                <  1:2753909/91‑1 (MQ=255)

                                           aaaCTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGt                                                >  1:2693817/1‑91 (MQ=255)

                                               tAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTaaaa                                            >  1:2718172/1‑91 (MQ=255)

                                                aaTACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTaaaaa                                           >  1:1216892/1‑91 (MQ=255)

                                                 aTACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAAt                                          >  1:3025852/1‑91 (MQ=255)

                                                 aTACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAAt                                          >  1:2575209/1‑91 (MQ=255)

                                                   acacATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGa                                        <  1:3745998/91‑1 (MQ=255)

                                                   acacATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGa                                        <  1:3562029/91‑1 (MQ=255)

                                                   acacATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGa                                        >  1:477918/1‑91 (MQ=255)

                                                   acacATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGa                                        <  1:3561695/91‑1 (MQ=255)

                                                   acacATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGa                                        >  1:1054278/1‑91 (MQ=255)

                                                    cacaTCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGAt                                       <  1:1275390/91‑1 (MQ=255)

                                                      caTCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCa                                     >  1:3608775/1‑91 (MQ=255)

                                                         cccAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACa                                  <  1:1763327/91‑1 (MQ=255)

                                                          ccAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACAt                                 >  1:433035/1‑91 (MQ=255)

                                                          ccAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACAt                                 >  1:544453/1‑91 (MQ=255)

                                                           cAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACAtt                                <  1:1717454/91‑1 (MQ=255)

                                                             ataataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTg                              >  1:4000075/1‑91 (MQ=255)

                                                             ataataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTg                              >  1:2304200/1‑91 (MQ=255)

                                                             ataataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTg                              >  1:257105/1‑91 (MQ=255)

                                                              taataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGc                             <  1:1738668/91‑1 (MQ=255)

                                                              taataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGc                             >  1:2826809/1‑91 (MQ=255)

                                                              taataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGc                             >  1:3563770/1‑91 (MQ=255)

                                                               aataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCTTTAATGCAGTAAAAATGATCAACATTTGCg                            >  1:2843892/1‑91 (MQ=255)

                                                                ataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGt                           >  1:144068/1‑91 (MQ=255)

                                                                ataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGt                           >  1:1938181/1‑91 (MQ=255)

                                                                ataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGt                           >  1:3625443/1‑91 (MQ=255)

                                                                ataGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATATAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGt                           >  1:269628/1‑91 (MQ=255)

                                                                 taGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGtt                          <  1:2375174/91‑1 (MQ=255)

                                                                   gAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGa                        <  1:1998159/91‑1 (MQ=255)

                                                                   gAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGa                        <  1:2900865/91‑1 (MQ=255)

                                                                   gAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGa                        <  1:737998/91‑1 (MQ=255)

                                                                     aCGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCTACATTTGCGTTGata                      <  1:3531997/91‑1 (MQ=255)

                                                                     aCGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGata                      <  1:1211487/91‑1 (MQ=255)

                                                                     aCGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGata                      <  1:1811368/91‑1 (MQ=255)

                                                                      cGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGatat                     >  1:80918/1‑91 (MQ=255)

                                                                      cGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGatat                     >  1:3814938/1‑91 (MQ=255)

                                                                           aaaaaGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATAtt                <  1:3621082/91‑1 (MQ=255)

                                                                            aaaaGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATAttt               >  1:2270545/1‑91 (MQ=255)

                                                                              aaGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTtgt             <  1:420302/91‑1 (MQ=255)

                                                                              aaGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTtgt             >  1:2905515/1‑91 (MQ=255)

                                                                                gCCAATTTTTactacatattttttgaaaaaattggctttttactcgttctattattgggatgtgtattagtttatgtaggatatctttatt           <  1:264334‑M1/91‑82 (MQ=255)

                                                                                  cAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTgtgtgt         >  1:2132931/1‑91 (MQ=255)

                                                                                  cAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTgtgtgt         >  1:1871868/1‑91 (MQ=255)

                                                                                   aaTTTTTTCAAAAAATATGTAGTaaaaattggatttttactcgttctattattgggatgtgtattagtttatgtaggatatctttattttc        <  1:204835‑M2/91‑69 (MQ=255)

                                                                                   aaTTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTc        >  1:2481019/1‑91 (MQ=255)

                                                                                   aaTTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTc        <  1:4132326/91‑1 (MQ=255)

                                                                                   aaTTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTc        >  1:2840462/1‑91 (MQ=255)

                                                                                   aaTTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTc        >  1:2481946/1‑91 (MQ=255)

                                                                                   aaTTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTc        >  1:2481052/1‑91 (MQ=255)

                                                                                    aTTTTTTCAAAAAATATGTAGTAAAAATTTGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCa       <  1:3330060/91‑1 (MQ=255)

                                                                                     ttttttCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCAt      >  1:1598341/1‑91 (MQ=255)

                                                                                      tttttCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCATg     >  1:2595532/1‑91 (MQ=255)

                                                                                       ttttCAAAAAATATGTAGTaaaaattggctttttactcgttctattattgggatgtgtattagtttatgtaggatatctttattttcataa    <  1:545679‑M2/91‑73 (MQ=255)

                                                                                       tttactacatattttttgaaaaaattggctttttactcgttctattattgggatgtgtattagtttatgtaggatatctttattttcataa    <  1:102611‑M1/91‑89 (MQ=255)

                                                                                        ttactacatgttttttgaaaaaattggctttttactcgttctattattgggatgtgtattagtttatgtaggatatctttattttcataaa   <  1:3966720‑M1/91‑90 (MQ=255)

                                                                                        ttactacatcttttttgaaaaaattggctttttactcgttctattattgggatgtgtattagtttatgtaggatatctttattttcataaa   <  1:3966405‑M1/91‑90 (MQ=255)

                                                                                         ttCAAAAAATATGTAGTaaaaattggctttttactcgttctattattgggatgtgtattagtttatgtaggatatctttattttcataaaa  <  1:1954505‑M2/91‑75 (MQ=255)

                                                                                         ttCAAAAAATATGTAGTaaaaattggctttttactcgttctattattgggatgtgtattagtttatgtaggatatctttattttcataaaa  <  1:1954779‑M2/91‑75 (MQ=255)

                                                                                         tactacatattttttgaaaaaattggctttttactcgttctattattgggatgtgtattagtttatgtaggatatctttattttcataaaa  >  1:2788977‑M1/1‑1 (MQ=255)

GCCAAAAGGCCACGTATTTTATGAAAATAAAGATATCCTACATAAACTAATACACATCCCAATAATAGAACGAGTAAAAAGCCAATTTTTTCAAAAAATATGTAGTAAAAATTGGCAATAATCATTAATGCAGTAAAAATGATCAACATTTGCGTTGATATATATTTGTGTGTCATGTTT  >  USA300TCH1516_ALE/2028469‑2028648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.