| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2030214 | 99 (1.010) | 11 (0.120) | 5/144 | NT | 10.4% | intergenic (‑194/‑334) | map/USA300HOU_RS10250 | Methionine aminopeptidase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2030262 | 101 (1.140) | intergenic (‑242/‑286) | map/USA300HOU_RS10250 | Methionine aminopeptidase/hypothetical protein | |||||
TAGTGTGATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2030121‑2030214‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggccccAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGGGCCCCAACATAGAGAAATTGGATCTACAATTTCTACAGG < USA300TCH1516_ALE/2030262‑2030173 TAGTGTGATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGC > 1:573608/1‑91TAGTGTGATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGC > 1:2927846/1‑91TAGTGTGATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGC > 1:2928704/1‑91TAGTGTGATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGC < 1:2623654/91‑1TAGTGTGATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGC < 1:1909449/91‑1 GTGTGATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCC > 1:2710601/1‑91 GTGTGATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCC < 1:1591973/91‑1 GTGTGATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCC < 1:3742027/91‑1 GTGTGATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCC > 1:3698280/1‑91 TGTGATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCC < 1:1831318/91‑1 TGTGATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCC < 1:1831276/91‑1 TGTGATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCC < 1:1705062/91‑1 TGTGATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCC < 1:382259/91‑1 TGTGATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCC < 1:1001087/91‑1 ATTGCCTGTAGAAATTGTAGATCCAATTTCTCTCTGTTGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTT < 1:3401132/91‑1 ATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTT < 1:1062267/91‑1 ATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTT < 1:3028847/91‑1 ATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTT < 1:2366110/91‑1 TTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTG < 1:625168/91‑1 CCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATTTGCAGGTTGGCG < 1:3179569/91‑1 TGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGG < 1:1669300/91‑1 TGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGG < 1:1669533/91‑1 TAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGGGC < 1:2650249/91‑1 TAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGGGC < 1:4044688/91‑1 TAGAAATTGTAGATCCAATTTCTCTATGTCGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGGGC < 1:3878757/91‑1 GGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGGGCCCCAACATAGAGAAATTGGATCTACAATTTC > 1:2636300/1‑91 GGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGGGCCCCAACATAGAGAAATTGGATCTACAATTTC < 1:1751793/91‑1 GCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGGGCCCCAACATAGAGAAATTGGATCTACAATTTCTA > 1:2703609/1‑91 GCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGGGCCCCAACATAGAGAAATTGGATCTACAATTTCTA < 1:3570769/91‑1 GCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGGGCCCCAACATAGAGAAATTGGATCTACAATTTCTA > 1:2704340/1‑91 CCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGGGCCCCAACATAGAGAAATTGGATCTACAATTTCTACA > 1:3864815/1‑91 CCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGGGCCCCAACATAGAGAAATTGGATCTGCAATTTCTACAG < 1:3200915/91‑1 CCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGGGCCCCAACATAGAGAAATTGGATCTACAATTTCTACAG < 1:3594497/91‑1 CCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGGGCCCCAACATAGAGAAATTGGATCTACAATTTCTACAG < 1:3594496/91‑1 CCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGGGCCCCAACATAGAGAAATTGGATCTACAATTTCTACAG > 1:324528/1‑91 CAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGGGCCCCAACATAGAGAAATTGGATCTACAATTTCTACAGG > 1:2147654/1‑91 TAGTGTGATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2030121‑2030214‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggccccAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGGGCCCCAACATAGAGAAATTGGATCTACAATTTCTACAGG < USA300TCH1516_ALE/2030262‑2030173 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |