BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2030214	99 (1.010)	11 (0.120)	5/144	NT	10.4%	intergenic (‑194/‑334)	map/USA300HOU_RS10250	Methionine aminopeptidase/hypothetical protein
*	?	USA300TCH1516_ALE	= 2030262	101 (1.140)	11 (0.120)	5/144	NT	10.4%	intergenic (‑242/‑286)	map/USA300HOU_RS10250	Methionine aminopeptidase/hypothetical protein

Only 100 of 163 total aligned reads displayed.

TGTGATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTG  >  USA300TCH1516_ALE/2030124‑2030304

tgtgATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCC                                                                                            <  1:382259‑M1/91‑1 (MQ=255)

tgtgATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCC                                                                                            <  1:1831276‑M1/91‑1 (MQ=255)

tgtgATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCC                                                                                            <  1:1705062‑M1/91‑1 (MQ=255)

tgtgATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCC                                                                                            <  1:1001087‑M1/91‑1 (MQ=255)

 gtgATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCg                                                                                           <  1:2463482/91‑1 (MQ=255)

 gtgATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCg                                                                                           >  1:3641514/1‑91 (MQ=255)

 gtgATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCg                                                                                           <  1:860640/91‑1 (MQ=255)

  tgATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGc                                                                                          <  1:3661806/91‑1 (MQ=255)

  tgATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGc                                                                                          >  1:1553488/1‑91 (MQ=255)

  tgATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGc                                                                                          >  1:2215797/1‑91 (MQ=255)

   gATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGcc                                                                                         >  1:2651305/1‑91 (MQ=255)

     tAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCaa                                                                                       >  1:2700996/1‑91 (MQ=255)

      aaaGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAAc                                                                                      >  1:117058/1‑91 (MQ=255)

       aaGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAAcc                                                                                     >  1:1386870/1‑91 (MQ=255)

          aaaaaaTATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGc                                                                                  >  1:822752/1‑91 (MQ=255)

           aaaaaTATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGca                                                                                 >  1:706226/1‑91 (MQ=255)

           aaaaaTATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGca                                                                                 >  1:3356082/1‑91 (MQ=255)

           aaaaaTATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGca                                                                                 >  1:1300939/1‑91 (MQ=255)

            aaaaTATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGcac                                                                                >  1:427235/1‑91 (MQ=255)

            aaaaTATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGcac                                                                                >  1:1601635/1‑91 (MQ=255)

            aaaaTATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGcac                                                                                <  1:308022/91‑1 (MQ=255)

             aaaTATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGcaca                                                                               >  1:1571417/1‑91 (MQ=255)

             aaaTATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGcaca                                                                               <  1:3348125/91‑1 (MQ=255)

             aaaTATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGcaca                                                                               >  1:1910483/1‑91 (MQ=255)

              aaTATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACAt                                                                              >  1:2354913/1‑91 (MQ=255)

              aaTATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACAt                                                                              >  1:3207499/1‑91 (MQ=255)

              aaTATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACAt                                                                              <  1:3866964/91‑1 (MQ=255)

              aaTATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACAt                                                                              >  1:3835054/1‑91 (MQ=255)

               atatTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACAtt                                                                             >  1:1319096/1‑91 (MQ=255)

                 atTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTAt                                                                           >  1:470381/1‑91 (MQ=255)

                  tttCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATc                                                                          >  1:3989640/1‑91 (MQ=255)

                  tttCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATc                                                                          >  1:3360703/1‑91 (MQ=255)

                  tttCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATc                                                                          >  1:793317/1‑91 (MQ=255)

                  tttCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATc                                                                          >  1:2689748/1‑91 (MQ=255)

                   ttCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCg                                                                         >  1:2755561/1‑91 (MQ=255)

                   ttCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCg                                                                         >  1:126284/1‑91 (MQ=255)

                    tCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGt                                                                        >  1:2370612/1‑91 (MQ=255)

                        tATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGc                                                                    <  1:3804229/91‑1 (MQ=255)

                        gaTCGTTATACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGc                                                                    <  1:2086178/90‑1 (MQ=255)

                          tCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTg                                                                  <  1:1838942/91‑1 (MQ=255)

                           cGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGa                                                                 <  1:729528/91‑1 (MQ=255)

                             ttGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGAACCAATTTCCCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACt                                                               >  1:3303162/1‑91 (MQ=255)

                                  ccccAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCg                                                          <  1:3023200/91‑1 (MQ=255)

                                  ccccAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCg                                                          <  1:2414029/91‑1 (MQ=255)

                                  ccccAACTTGCATTGCCTGCAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCg                                                          <  1:1374250/91‑1 (MQ=255)

                                     cAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCa                                                       >  1:2553196/1‑91 (MQ=255)

                                     cAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCa                                                       >  1:3262987/1‑91 (MQ=255)

                                     cAACTTGCATTGCCTGTAGAAATTGCAGATCCAATTTCTGTATGTTGGGGCCCGGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCa                                                       <  1:3858833/91‑1 (MQ=21)

                                        ctggCATTGCCTGGAGAAATTGTAGACACAATTGCCGTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGGCAGCt                                                    <  1:3680575/88‑1 (MQ=18)

                                         ttGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCtt                                                   <  1:99520/91‑1 (MQ=255)

                                          tGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTc                                                  >  1:2419667/1‑91 (MQ=255)

                                           gCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCATAGTATCGTAAGCTGACTTTTCGTCAGCTTCt                                                 >  1:3320946/1‑91 (MQ=255)

                                           gCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCt                                                 >  1:2786819/1‑91 (MQ=255)

                                            cATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGctgctg                                                >  1:3525133/1‑91 (MQ=255)

                                            cATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCtg                                                >  1:908995/1‑91 (MQ=255)

                                             aTTGCCTGTAGAAATTGTAGATCCAATTTCTCTCTGTTGGGGCCCCaacacagaagctgacgaaaagtcagcttacgataatgtgcaggtt                                               <  1:3401132‑M1/91‑46 (MQ=255)

                                             aTTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCaacacagaagctgacgaaaagtcagcttacgataatgtgcaggtt                                               <  1:1062267‑M1/91‑46 (MQ=255)

                                             aTTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCtgt                                               >  1:3051578/1‑91 (MQ=255)

                                              ttGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCaacacagaagctgacgaaaagtcagcttacgataatgtgcaggttg                                              <  1:625168‑M1/91‑47 (MQ=255)

                                              ttGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCtgtg                                              <  1:866331/91‑1 (MQ=255)

                                                 ccTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCaacacagaagctgacgaaaagtcagcttacgataatttgcaggttggcg                                           <  1:3179569‑M1/91‑50 (MQ=255)

                                                  cTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTgg                                          <  1:3594497‑M2/91‑3 (MQ=255)

                                                   tGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCaacacagaagctgacgaaaagtcagcttacgataatgtgcaggttggcggg                                         <  1:1669533‑M1/91‑52 (MQ=255)

                                                   tGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCaacacagaagctgacgaaaagtcagcttacgataatgtgcaggttggcggg                                         <  1:1669300‑M1/91‑52 (MQ=255)

                                                   tGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggg                                         >  1:3864815‑M2/1‑88 (MQ=255)

                                                     tAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggc                                       <  1:3570769‑M2/91‑6 (MQ=255)

                                                     tAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggc                                       >  1:2704340‑M2/1‑86 (MQ=255)

                                                     tAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggc                                       >  1:2703609‑M2/1‑86 (MQ=255)

                                                       gAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggccc                                     >  1:2636300‑M2/1‑84 (MQ=255)

                                                         aaTTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCTCATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGTCCCg                                   <  1:3282180/91‑1 (MQ=255)

                                                         aaTTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCg                                   <  1:3086030/91‑1 (MQ=255)

                                                             gTAGATCCAATTTCTCTATGTTGGGG‑CCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAAc                              <  1:2274533/91‑1 (MQ=255)

                                                              tAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAAc                              <  1:1203037/91‑1 (MQ=255)

                                                               aGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAAcc                             >  1:2539535/1‑91 (MQ=255)

                                                               aGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAAcc                             >  1:926837/1‑91 (MQ=255)

                                                                 aTCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTg                           <  1:2208382/91‑1 (MQ=255)

                                                                 aTCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTg                           <  1:1681103/91‑1 (MQ=255)

                                                                 aTCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTg                           <  1:1681139/91‑1 (MQ=255)

                                                                  tCCAATTTCTCTATGTTTGGGCTCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGc                          <  1:2110958/91‑1 (MQ=255)

                                                                  tCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGc                          <  1:2110911/91‑1 (MQ=255)

                                                                  tCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGc                          >  1:2397458/1‑91 (MQ=255)

                                                                     aaTTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCAtt                       <  1:444289/91‑1 (MQ=255)

                                                                           tctATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGt                 <  1:2038151/91‑1 (MQ=255)

                                                                               tGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGaa             <  1:212415/91‑1 (MQ=255)

                                                                                    gggCCCCaacacagaagctgacgaaaagtcagcttacgataatgtgcaggttggcggggccccaacatagagaaattggatctacaatttc        <  1:1751793‑M1/91‑85 (MQ=255)

                                                                                    gggCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTcg        >  1:1949897/1‑90 (MQ=255)

                                                                                     ggCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCtt       >  1:1973673/1‑91 (MQ=255)

                                                                                      gCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggccccgacatagagaaattggatctacaatttcta      <  1:3878757‑M2/91‑39 (MQ=255)

                                                                                      gCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggccccaacatagagaaattggatctacaatttcta      <  1:4044688‑M2/91‑39 (MQ=255)

                                                                                      gCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggccccaacatagagaaattggatctacaatttcta      <  1:2650249‑M2/91‑39 (MQ=255)

                                                                                        cccGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCttttt    <  1:1334686/91‑1 (MQ=255)

                                                                                         ccaacacagaagctgacgaaaagtcagcttacgataatgtgcaggttggcggggccccaacatagagaaattggatctgcaatttctacag   <  1:3200915‑M1/91‑90 (MQ=255)

                                                                                         ccaacacagaagctgacgaaaagtcagcttacgataatgtgcaggttggcggggccccaacatagagaaattggatctacaatttctacag   <  1:3594497‑M1/91‑90 (MQ=255)

                                                                                         ccaacacagaagctgacgaaaagtcagcttacgataatgtgcaggttggcggggccccaacatagagaaattggatctacaatttctacag   <  1:3594496‑M1/91‑90 (MQ=255)

                                                                                         ccaacacagaagctgacgaaaagtcagcttacgataatgtgcaggttggcggggccccaacatagagaaattggatctacaatttctacag   >  1:324528‑M1/1‑2 (MQ=255)

                                                                                          caacacagaagctgacgaaaagtcagcttacgataatgtgcaggttggcggggccccaacatagagaaattggatctacaatttctacagg  >  1:2147654‑M1/1‑1 (MQ=255)

                                                                                          cGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTg  <  1:595763/91‑1 (MQ=255)

                                                                                          cGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTg  >  1:1492597/1‑91 (MQ=255)

                                                                                          cGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTg  <  1:2899131/91‑1 (MQ=255)

                                                                                          cGCCAACCTGCAAATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggccccaacatagagaaattggatctacaatttctacagg  <  1:3179569‑M2/91‑43 (MQ=255)

TGTGATAAAGAAAAAATATTTCTTTATCGTTGTACCCCAACTTGCATTGCCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTG  >  USA300TCH1516_ALE/2030124‑2030304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.