BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2030214	99 (1.010)	11 (0.120)	5/144	NT	10.4%	intergenic (‑194/‑334)	map/USA300HOU_RS10250	Methionine aminopeptidase/hypothetical protein
*	?	USA300TCH1516_ALE	= 2030262	101 (1.140)	11 (0.120)	5/144	NT	10.4%	intergenic (‑242/‑286)	map/USA300HOU_RS10250	Methionine aminopeptidase/hypothetical protein

Only 100 of 134 total aligned reads displayed.

CCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACTATAATTGAAAAATGCTTG  >  USA300TCH1516_ALE/2030173‑2030349

ccTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTg                                                                                        >  1:2147654‑M2/1‑90 (MQ=255)

 cTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTgg                                                                                       <  1:3594497‑M2/91‑3 (MQ=255)

 cTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTgg                                                                                       >  1:324528‑M2/1‑89 (MQ=255)

  tGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggg                                                                                      >  1:3864815‑M2/1‑88 (MQ=255)

    tAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggc                                                                                    <  1:3570769‑M2/91‑6 (MQ=255)

    tAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggc                                                                                    >  1:2703609‑M2/1‑86 (MQ=255)

      gAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggccc                                                                                  >  1:2636300‑M2/1‑84 (MQ=255)

        aaTTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCTCATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGTCCCg                                                                                <  1:3282180/91‑1 (MQ=255)

        aaTTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCg                                                                                <  1:3086030/91‑1 (MQ=255)

         aTTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGc                                                                               <  1:2756275/91‑1 (MQ=255)

           tGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCa                                                                             <  1:735725/91‑1 (MQ=255)

            gTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCaa                                                                            >  1:1592400/1‑91 (MQ=255)

            gTAGATCCAATTTCTCTATGTTGGGG‑CCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAAc                                                                           <  1:2274533/91‑1 (MQ=255)

             tAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAAc                                                                           <  1:3459605/91‑1 (MQ=255)

             tAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAAc                                                                           <  1:3727996/91‑1 (MQ=255)

             tAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAAc                                                                           <  1:1203072/91‑1 (MQ=255)

              aGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAAcc                                                                          >  1:926837/1‑91 (MQ=255)

              aGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAAcc                                                                          >  1:2539535/1‑91 (MQ=255)

              aGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAAcc                                                                          >  1:477351/1‑91 (MQ=255)

                aTCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTg                                                                        <  1:1681103/91‑1 (MQ=255)

                aTCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTg                                                                        <  1:1681139/91‑1 (MQ=255)

                aTCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTg                                                                        >  1:307862/1‑91 (MQ=255)

                 tCCAATTTCTCTATGTTTGGGCTCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGc                                                                       <  1:2110958/91‑1 (MQ=255)

                 tCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGc                                                                       >  1:2397458/1‑91 (MQ=255)

                 tCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGc                                                                       <  1:2110911/91‑1 (MQ=255)

                  ccAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCa                                                                      <  1:1489531/91‑1 (MQ=255)

                    aaTTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCAtt                                                                    <  1:444289/91‑1 (MQ=255)

                          tctATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGt                                                              <  1:2038151/91‑1 (MQ=255)

                            tATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAg                                                            <  1:414980/91‑1 (MQ=255)

                             aTGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGa                                                           >  1:2446659/1‑91 (MQ=255)

                              tGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGaa                                                          <  1:212415/91‑1 (MQ=255)

                               gTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCAATGCCTGTAGAAt                                                         <  1:3199983/91‑1 (MQ=255)

                                   gggCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTcg                                                     >  1:1949897/1‑90 (MQ=255)

                                    ggCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCtt                                                    >  1:1973673/1‑91 (MQ=255)

                                     gCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggccccgacatagagaaattggatctacaatttcta                                                   <  1:3878757‑M2/91‑39 (MQ=255)

                                     gCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggccccaacatagagaaattggatctacaatttcta                                                   <  1:4044688‑M2/91‑39 (MQ=255)

                                     gCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggccccaacatagagaaattggatctacaatttcta                                                   <  1:2650249‑M2/91‑39 (MQ=255)

                                     gCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTcaaa                                                   <  1:98494/91‑4 (MQ=255)

                                     gCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCttt                                                   >  1:699045/1‑91 (MQ=255)

                                      ccccGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCACCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCtttt                                                  >  1:3598322/1‑91 (MQ=255)

                                       cccGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggccccaacatagagaaattggatctacaatttctaca                                                 <  1:1669533‑M2/91‑41 (MQ=255)

                                       cccGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCttttt                                                 <  1:1334686/91‑1 (MQ=255)

                                         cGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTg                                               <  1:595763/91‑1 (MQ=255)

                                         cGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTg                                               <  1:2899131/91‑1 (MQ=255)

                                         cGCCAACCTGCAAATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggccccaacatagagaaattggatctacaatttctacagg                                               <  1:3179569‑M2/91‑43 (MQ=255)

                                            cAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggccccaacatagagaaattggatctacaatttctacaggcaa                                            <  1:625168‑M2/91‑46 (MQ=255)

                                            cAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGaaa                                            >  1:2257524/1‑91 (MQ=255)

                                            cAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGaaa                                            >  1:1705682/1‑91 (MQ=255)

                                             aaCCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggccccaacatagagaaattggatctacaatttctacaggcaat                                           <  1:1062267‑M2/91‑47 (MQ=255)

                                             aaCCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggccccaacatagagaaattggatctacaatttctacaggcaat                                           <  1:3028847‑M2/91‑47 (MQ=255)

                                             aaCCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggccccaacatagagaaattggatctacaatttctacaggcaat                                           <  1:2366110‑M2/91‑47 (MQ=255)

                                             aaCCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTggggccccaacagagagaaattggatctacaatttctacaggcaat                                           <  1:3401132‑M2/91‑47 (MQ=255)

                                              aCCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAAtt                                          >  1:2607440/1‑91 (MQ=255)

                                               ccTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATtc                                         <  1:984310/91‑1 (MQ=255)

                                               ccTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATtc                                         <  1:2635970/91‑1 (MQ=255)

                                                    acaTTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTAt                                    >  1:846780/1‑91 (MQ=255)

                                                     caTTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATg                                   <  1:3609334/91‑1 (MQ=255)

                                                     caTTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATg                                   <  1:1264048/91‑1 (MQ=255)

                                                     caTTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATg                                   >  1:2857230/1‑91 (MQ=255)

                                                      aTTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGt                                  <  1:4016528/91‑1 (MQ=255)

                                                        tATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTg                                >  1:3030993/1‑91 (MQ=255)

                                                        tATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTg                                >  1:3030630/1‑91 (MQ=255)

                                                         aTCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTgg                               <  1:3228834/91‑1 (MQ=255)

                                                           cGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTgggg                             >  1:1698510/1‑91 (MQ=255)

                                                           cGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTgggg                             >  1:1436141/1‑91 (MQ=255)

                                                           cGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTgggg                             >  1:1435024/1‑91 (MQ=255)

                                                            gTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGc                            <  1:1821585/91‑1 (MQ=255)

                                                             tAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGcc                           <  1:843551/91‑1 (MQ=255)

                                                               aGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGcccc                         >  1:1073229/1‑91 (MQ=255)

                                                               aGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGcccc                         <  1:1002171/91‑1 (MQ=255)

                                                                gCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCg                        >  1:650038/1‑91 (MQ=255)

                                                                 cTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCgg                       <  1:2017098/91‑1 (MQ=255)

                                                                 cTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCgg                       <  1:4028967/91‑1 (MQ=255)

                                                                  tGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGa                      <  1:60667/91‑1 (MQ=255)

                                                                   gACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGAc                     >  1:1312531/1‑91 (MQ=255)

                                                                   gACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGAc                     >  1:3707869/1‑91 (MQ=255)

                                                                   gACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGAc                     >  1:1567375/1‑91 (MQ=255)

                                                                    aCTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACt                    <  1:2595065/91‑1 (MQ=255)

                                                                     cTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACta                   >  1:2206610/1‑91 (MQ=255)

                                                                     cTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACta                   >  1:3118830/1‑91 (MQ=255)

                                                                      ttttCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACtat                  >  1:2393697/1‑91 (MQ=255)

                                                                       tttCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACtata                 >  1:1609616/1‑91 (MQ=255)

                                                                       aaacGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATACTCAATGTTGGGGCCCCGGACtata                 >  1:3709985/4‑91 (MQ=255)

                                                                       aaaagTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACtata                 >  1:1748251/5‑91 (MQ=255)

                                                                         tCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACTATAAt               <  1:1793608/91‑1 (MQ=255)

                                                                         tCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACTATAAt               <  1:2519417/91‑1 (MQ=255)

                                                                           gTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACTATAATTg             >  1:1292197/1‑91 (MQ=255)

                                                                            tCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACTATAATTGa            <  1:953932/91‑1 (MQ=255)

                                                                            tCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACTATAATTGa            <  1:933751/91‑1 (MQ=255)

                                                                            tCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACTATAATTGa            >  1:843154/1‑91 (MQ=255)

                                                                            tCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTCTTTGAAATTCTCTATGTTGGGGCCCCGGACTATAATTGa            <  1:2719802/91‑1 (MQ=255)

                                                                             cAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACTATAATTGaa           >  1:1824468/1‑91 (MQ=255)

                                                                             cAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATCGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACTATAATTGaa           >  1:3094720/1‑91 (MQ=255)

                                                                               gCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACTATAATTGaaaa         >  1:3886378/1‑91 (MQ=255)

                                                                                cTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACTATAATTGaaaaa        <  1:2957404/91‑1 (MQ=255)

                                                                                     gtgtTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACTATAATTGAAAAATGCtt   >  1:1249255/1‑91 (MQ=255)

                                                                                     gtgtTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACTATAATTGAAAAATGCtt   >  1:3336033/1‑91 (MQ=255)

                                                                                     gtgtTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACTATAATTGAAAAATGCtt   >  1:2265004/1‑91 (MQ=255)

                                                                                     gtgtTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACTATAATTGAAAAATGCtt   >  1:3398758/1‑91 (MQ=255)

                                                                                      tgtTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACTATAATTGAAAAATGCTTg  <  1:3453722/91‑1 (MQ=255)

CCTGTAGAAATTGTAGATCCAATTTCTCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCATTGCCTGTAGAATTTCTTTTTTGAAATTCTCTATGTTGGGGCCCCGGACTATAATTGAAAAATGCTTG  >  USA300TCH1516_ALE/2030173‑2030349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.