| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2036458 = | 120 (1.220) | 7 (0.080) | 6/148 | NT | 6.0% | intergenic (+15/+53) | polC_2/dinB | DNA polymerase III PolC‑type/DNA polymerase IV |
| ? | USA300TCH1516_ALE | 2036504 = | 107 (1.180) | intergenic (+61/+7) | polC_2/dinB | DNA polymerase III PolC‑type/DNA polymerase IV | |||||
ACAATCAACTTATAAAAATATGACGATATATGACTTTATATAAAATAAAGCTCCCTGCAAAGTTTACATTTTTACAATGCTTACTTTTGAAGGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2036553‑2036458‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agggagCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATAAGTCGAATTGG > USA300TCH1516_ALE/2036504‑2036591 ACAATCAACTTATAAAAATATGACGATATATGACTTTATATAAAATAAAGCTCCCTGCAAAGTTTACATTTTTACAATGCTTACTTTTGAA < 1:613791/91‑1ACAATCAACTTATAAAAATATGACGATATATGACTTTATATAAAATAAAGCTCCCTGCAAAGTTTACATTTTTACAATGCTTACTTTTGAA < 1:3875445/91‑1ACAATCAACTTATAAAAATATGACGATATATGACTTTATATAAAATAAAGCTCCCTGCAAAGTTTACATTTTTACAATGCTTACTTTTGAA < 1:2906218/91‑1 CAATCAACTTATAAAAATATGACGATATATGACTTTATATAAAATAAAGCTCCCTGCAAAGTTTACATTTTTACAATGCTTACTTTTGAAG < 1:2662408/91‑1 ATCAACTTATAAAAATATGACGATATATGACTTTATATAAAATAAAGCTCCCTGCAAAGTTTACATTTTTACAATGCTTACTTTTGAAGGG < 1:38462/91‑1 TCAACTTATAAAAATATGACGATATATGACTTTATATAAAATAAAGCTCCCTGCAAAGTTTACATTTTTACAATGCTTACTTTTGAAGGGA > 1:1570587/1‑91 TCAACTTATAAAAATATGACGATATATGACTTTATATAAAATAAAGCTCCCTGCAAAGTTTACATTTTTACAATGCTTACTTTTGAAGGGA > 1:2511683/1‑91 CAACTTATAAAAATATGACGATATATGACTTTATATAAAATAAAGCTCCCTGCAAAGTTTACATTTTTACAATGCTTACTTTTGAAGGGAG > 1:828776/1‑91 CTTATAAAAATATGACGATATATGACTTTATATAAAATAAAGCTCCCTGCAAAGTTTACATTTTTACAATGCTTACTTTTGAAGGGActat > 1:3338305/1‑87 GACTTTATATAAAATAAAGCTCCCTGCAAAGTTTACATTTTTACAATGCTTACTTTTGAAGGGAG‑‑‑TATTTTATATAAAGTCATATATCGTC > 1:1521841/1‑91 TATATAAAATAAAGCTCCCTGCAAAGTTTACATTTTTACAATGCTTACTTTTGAAGGGAG‑‑‑TATTTTATATAAAGTCATATATCGTCATATT > 1:597147/1‑91 AAATAAAGCTCCCTGCAAAGTTTACATTTTTACAATGCTTACTTTTGAAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTT > 1:703951/1‑91 AGCTCCCTGCAAAGTTTACATTTTTACAATGCTTACTTTTGAAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGT > 1:3174944/1‑91 TCCCTGCAAAGTTTACATTTTTACAATGCTTACTTTTGAAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGA > 1:2303460/1‑91 AAAGTTTACATTTTTACAATGCTTACTTTTGAAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCT > 1:1342060/1‑91 AAAGTTTACATTTTTACAATGCTTACTTTTGAAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCT > 1:1341936/1‑91 GGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATAAGTCGAATT < 1:262616/91‑1 GGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATAAGTCGAATT < 1:2170026/91‑1 GGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATAAGTCGAATTG > 1:334284/1‑91 GAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATAAGTCGAATTGG < 1:2239804/91‑1 GAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATAAGTCGAATTGG < 1:1812700/91‑1 GAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATAAGTCGAATTGG < 1:175481/91‑1 GAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATAAGTCGAATTGG < 1:172349/91‑1 ACAATCAACTTATAAAAATATGACGATATATGACTTTATATAAAATAAAGCTCCCTGCAAAGTTTACATTTTTACAATGCTTACTTTTGAAGGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2036553‑2036458‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agggagCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATAAGTCGAATTGG > USA300TCH1516_ALE/2036504‑2036591 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |