BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2036458 =	120 (1.220)	7 (0.080)	6/148	NT	6.0%	intergenic (+15/+53)	polC_2/dinB	DNA polymerase III PolC‑type/DNA polymerase IV
*	?	USA300TCH1516_ALE	2036504 =	107 (1.180)	7 (0.080)	6/148	NT	6.0%	intergenic (+61/+7)	polC_2/dinB	DNA polymerase III PolC‑type/DNA polymerase IV

Only 100 of 148 total aligned reads displayed.

TAGGCTACTGAAAAATTATGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTG  >  USA300TCH1516_ALE/2036368‑2036548

tAGGCTACTGAAAAATTATGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATAc                                                                                            >  1:2198282/1‑91 (MQ=255)

 aGGCTACTGAAAAATTATGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAACTAAAATACt                                                                                           >  1:3720860/1‑91 (MQ=255)

  ggCTACTGAAAAATTATGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTc                                                                                          >  1:1635104/1‑91 (MQ=255)

  ccaattcgacttattggtgtcactgtaggtaatttagaacaatcaacttataaaaatatgacgatatatgactttatataaaataaagCTc                                                                                          <  1:172349‑M1/3‑1 (MQ=255)

  ccaattcgacttattggtgtcactgtaggtaatttagaacaatcaacttataaaaatatgacgatatatgactttatataaaataaagCTc                                                                                          <  1:175481‑M1/3‑1 (MQ=255)

  ccaattcgacttattggtgtcactgtaggtaatttagaacaatcaacttataaaaatatgacgatatatgactttatataaaataaagCTc                                                                                          <  1:1812700‑M1/3‑1 (MQ=255)

  ccaattcgacttattggtgtcactgtaggtaatttagaacaatcaacttataaaaatatgacgatatatgactttatataaaataaagCTc                                                                                          <  1:2239804‑M1/3‑1 (MQ=255)

   gCTACTGAAAAATTATGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTcc                                                                                         >  1:3197701/1‑91 (MQ=255)

   caattcgacttattggtgtcactgtaggtaatttagaacaatcaacttataaaaatatgacgatatatgactttatataaaataaagCTcc                                                                                         >  1:334284‑M1/88‑91 (MQ=255)

    aattcgacttattggtgtcactgtaggtaatttagaacaatcaacttataaaaatatgacgatatatgactttatataaaataaagCTccc                                                                                        <  1:2170026‑M1/5‑1 (MQ=255)

      aCTGAAAAATTATGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCtt                                                                                      >  1:3807348/1‑91 (MQ=255)

      aCTGAAAAATTATGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCtt                                                                                      >  1:3807070/1‑91 (MQ=255)

      aCTGAAAAATTATGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCtt                                                                                      >  1:3445680/1‑91 (MQ=255)

       cTGAAAAATTATGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTc                                                                                     <  1:2773832/91‑1 (MQ=255)

        tGAAAAATTATGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCa                                                                                    >  1:3149427/1‑91 (MQ=255)

          aaaaaTTATGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCaaa                                                                                  >  1:1349278/1‑91 (MQ=255)

            aaaTTATGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAg                                                                                >  1:980779/1‑91 (MQ=255)

            aaaTTATGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAg                                                                                >  1:3750814/1‑91 (MQ=255)

            aaaTTATGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAg                                                                                <  1:4112292/91‑1 (MQ=255)

            aaaTTATGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAg                                                                                >  1:4013608/1‑91 (MQ=255)

             aaTTATGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGt                                                                               <  1:1084000/91‑1 (MQ=255)

               ttATGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTaa                                                                             <  1:1971800/91‑1 (MQ=255)

                 aTGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGc                                                                           >  1:3597072/1‑91 (MQ=255)

                  tGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCa                                                                          <  1:1267555/91‑1 (MQ=255)

                     aaaTTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTg                                                                       <  1:4116430/91‑1 (MQ=255)

                     aaaTTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTg                                                                       >  1:1636299/1‑91 (MQ=255)

                           aaCATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTaaaaa                                                                 >  1:287557/1‑91 (MQ=255)

                            aCATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAAt                                                                >  1:3966582/1‑91 (MQ=255)

                            aCATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAAt                                                                >  1:3512341/1‑91 (MQ=255)

                             cATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATg                                                               >  1:2927553/1‑91 (MQ=255)

                             cATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATg                                                               >  1:2927121/1‑91 (MQ=255)

                             cATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATg                                                               >  1:1317379/1‑91 (MQ=255)

                             cATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATg                                                               >  1:1499996/1‑91 (MQ=255)

                              atatGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGt                                                              <  1:3839523/91‑1 (MQ=255)

                               tatGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTa                                                             >  1:1013735/1‑91 (MQ=255)

                                atGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTaa                                                            <  1:1010075/91‑1 (MQ=255)

                                    aaCTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACtt                                                        <  1:190697/91‑1 (MQ=255)

                                    aaCTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACtt                                                        <  1:2775459/91‑1 (MQ=255)

                                     agaacaatcaacttataaaaatatgacgatatatgactttatataaaataaagCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACttt                                                       >  1:1342060‑M1/54‑91 (MQ=255)

                                      cTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTg                                                      <  1:3217111/91‑1 (MQ=255)

                                       tAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTTCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGc                                                     <  1:3496070/91‑1 (MQ=255)

                                       tAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGc                                                     >  1:390640/1‑91 (MQ=255)

                                         atatTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAg                                                   >  1:126113/1‑91 (MQ=255)

                                         atatTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAg                                                   >  1:126348/1‑91 (MQ=255)

                                           atTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAggg                                                 <  1:2888929/91‑1 (MQ=255)

                                           atTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAggg                                                 >  1:527042/1‑91 (MQ=255)

                                            tttATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGa                                                >  1:1561275/1‑91 (MQ=255)

                                              tATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGc                                              >  1:875785/1‑91 (MQ=255)

                                              tATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGc                                              <  1:103085/91‑1 (MQ=255)

                                              tATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGc                                              >  1:292882/1‑91 (MQ=255)

                                              tATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGc                                              <  1:2654580/91‑1 (MQ=255)

                                               acttataaaaatatgacgatatatgactttatataaaataaagCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCt                                             >  1:3174944‑M1/44‑91 (MQ=255)

                                                tGGTAAATATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCtt                                            <  1:2070537/91‑1 (MQ=255)

                                                tGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCtt                                            <  1:3283683/91‑1 (MQ=255)

                                                tGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCtt                                            <  1:419665/91‑1 (MQ=255)

                                                  gTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCttta                                          <  1:931326/91‑1 (MQ=255)

                                                    aaaaaTCTAAAAGATAACGGCTAGGACTAAATTAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTAGCAGGGAGCtttatt                                        <  1:3545105/91‑1 (MQ=255)

                                                     aaaaTCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCtttattt                                       <  1:80654/91‑1 (MQ=255)

                                                     aaaaTCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCtttattt                                       <  1:2143246/91‑1 (MQ=255)

                                                      aaaTCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCtttatttt                                      <  1:2337839/91‑1 (MQ=255)

                                                        aTCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCtttattttat                                    <  1:2788658/91‑1 (MQ=255)

                                                         tCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTtata                                   <  1:1269592/91‑1 (MQ=255)

                                                          cTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTtatat                                  >  1:3161364/1‑91 (MQ=255)

                                                          cTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTtatat                                  <  1:2603486/91‑1 (MQ=255)

                                                           aatatgacgatatatgactttatataaaataCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTtatata                                 >  1:597147‑M1/32‑91 (MQ=255)

                                                            aaaaGATAAAGGCTAGGACTAAATAAAATACTCCCTTCACAAGTAAGCATTGTAAAAATGTAAACTTTGCATGGAGCTTTATTTTATATaa                                >  1:757037/1‑91 (MQ=255)

                                                            aaaaGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATaa                                >  1:757020/1‑91 (MQ=255)

                                                            aaaaGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATaa                                >  1:756674/1‑91 (MQ=255)

                                                            aaaaGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATaa                                >  1:499497/1‑91 (MQ=255)

                                                             aaaGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATaaa                               >  1:4027908/1‑91 (MQ=255)

                                                              aaGCTAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAg                              <  1:3275676/91‑1 (MQ=255)

                                                              aaGCTAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAg                              <  1:3275445/91‑1 (MQ=255)

                                                              aaGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAg                              >  1:1632761/1‑91 (MQ=255)

                                                                gacgatatatgactttatataaaataCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTc                            >  1:1521841‑M1/27‑91 (MQ=255)

                                                                  tAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCat                          >  1:3003828/1‑91 (MQ=255)

                                                                   aaaGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCata                         <  1:3011876/91‑1 (MQ=255)

                                                                    aaGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCatat                        >  1:1536149/1‑91 (MQ=255)

                                                                    aaGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCatat                        >  1:2943623/1‑91 (MQ=255)

                                                                    aaGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCatat                        >  1:3327001/1‑91 (MQ=255)

                                                                    aaGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCatat                        >  1:636135/1‑91 (MQ=255)

                                                                     aGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCatata                       <  1:80200/91‑1 (MQ=255)

                                                                       gCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATc                     <  1:3503741/91‑1 (MQ=255)

                                                                         tAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAGTGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGt                   <  1:3286187/91‑1 (MQ=255)

                                                                         tAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGt                   <  1:2102110/91‑1 (MQ=255)

                                                                          aGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTc                  <  1:3761809/91‑1 (MQ=255)

                                                                          aGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTc                  <  1:3098354/91‑1 (MQ=255)

                                                                            gACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCat                >  1:1110195/1‑91 (MQ=255)

                                                                            gACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCat                >  1:1440838/1‑91 (MQ=255)

                                                                            gACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCat                >  1:2396096/1‑91 (MQ=255)

                                                                              cTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCatat              <  1:739005/91‑1 (MQ=255)

                                                                                  ataaaataCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATAttttt          <  1:3776449/91‑1 (MQ=255)

                                                                                  ataaaataCTCCCTTCAAAAGTAAGCATCGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATAttttt          <  1:3145596/91‑1 (MQ=255)

                                                                                   taaaataCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTta         >  1:1574305/1‑91 (MQ=255)

                                                                                     aaataCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTtata       >  1:122703/1‑91 (MQ=255)

                                                                                      aataCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATaa      >  1:847278/1‑91 (MQ=255)

                                                                                       ataCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAg     <  1:1789321/91‑1 (MQ=255)

                                                                                       ataCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAg     <  1:1789340/91‑1 (MQ=255)

                                                                                        taCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGt    <  1:231129/91‑1 (MQ=255)

                                                                                        taCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGt    >  1:1639903/1‑91 (MQ=255)

                                                                                         aCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGtt   >  1:436866/1‑91 (MQ=255)

TAGGCTACTGAAAAATTATGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTG  >  USA300TCH1516_ALE/2036368‑2036548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.