BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2036458 =	120 (1.220)	7 (0.080)	6/148	NT	6.0%	intergenic (+15/+53)	polC_2/dinB	DNA polymerase III PolC‑type/DNA polymerase IV
*	?	USA300TCH1516_ALE	2036504 =	107 (1.180)	7 (0.080)	6/148	NT	6.0%	intergenic (+61/+7)	polC_2/dinB	DNA polymerase III PolC‑type/DNA polymerase IV

Only 100 of 152 total aligned reads displayed.

TATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATAAGTCGAATTGGTAC  >  USA300TCH1516_ALE/2036414‑2036594

tATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGc                                                                                            >  1:875785/1‑91 (MQ=255)

tATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGc                                                                                            <  1:3308008/91‑1 (MQ=255)

tATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGc                                                                                            >  1:1369565/1‑91 (MQ=255)

tATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGc                                                                                            <  1:103085/91‑1 (MQ=255)

tATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGc                                                                                            >  1:292882/1‑91 (MQ=255)

 acttataaaaatatgacgatatatgactttatataaaataaagCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCt                                                                                           >  1:3174944‑M1/44‑91 (MQ=255)

  tGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCtt                                                                                          <  1:419665/91‑1 (MQ=255)

  tGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCtt                                                                                          <  1:3283683/91‑1 (MQ=255)

  tGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCtt                                                                                          <  1:3283478/91‑1 (MQ=255)

    gTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCttta                                                                                        <  1:931326/91‑1 (MQ=255)

      aaaaaTCTAAAAGATAACGGCTAGGACTAAATTAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTAGCAGGGAGCtttatt                                                                                      <  1:3545105/91‑1 (MQ=255)

       aaaaatatgacgatatatgactttatataaaataaagCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCtttattt                                                                                     >  1:703951‑M1/38‑91 (MQ=255)

       aaaaTCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCtttattt                                                                                     <  1:80654/91‑1 (MQ=255)

        aaaTCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCtttatttt                                                                                    <  1:295713/91‑1 (MQ=255)

        aaaTCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCtttatttt                                                                                    <  1:2337839/91‑1 (MQ=255)

           tCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTtata                                                                                 <  1:1269592/91‑1 (MQ=255)

            cTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTtatat                                                                                <  1:2603486/91‑1 (MQ=255)

            cTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTtatat                                                                                >  1:3161364/1‑91 (MQ=255)

             aatatgacgatatatgactttatataaaataCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTtatata                                                                               >  1:597147‑M1/32‑91 (MQ=255)

              aaaaGATAAAGGCTAGGACTAAATAAAATACTCCCTTCACAAGTAAGCATTGTAAAAATGTAAACTTTGCATGGAGCTTTATTTTATATaa                                                                              >  1:757037/1‑91 (MQ=255)

              aaaaGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATaa                                                                              >  1:757020/1‑91 (MQ=255)

              aaaaGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATaa                                                                              >  1:756674/1‑91 (MQ=255)

              aaaaGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATaa                                                                              >  1:499497/1‑91 (MQ=255)

               aaaGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATaaa                                                                             >  1:3407006/1‑91 (MQ=255)

               aaaGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATaaa                                                                             >  1:4027908/1‑91 (MQ=255)

                aaGCTAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAg                                                                            <  1:3275445/91‑1 (MQ=255)

                aaGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAg                                                                            <  1:3275176/91‑1 (MQ=255)

                  gacgatatatgactttatataaaataCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTc                                                                          >  1:1521841‑M1/27‑91 (MQ=255)

                   aTAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCa                                                                         >  1:3193372/1‑91 (MQ=255)

                    tAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCat                                                                        >  1:3003828/1‑91 (MQ=255)

                      aaGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCatat                                                                      >  1:636135/1‑91 (MQ=255)

                      aaGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCatat                                                                      >  1:1785782/1‑91 (MQ=255)

                         gactttatataaaataaagctccctgcaaagtttacatttttacaatgcttacttttgaagggag‑‑‑TATTTTATATAAAGTCATATATCGTc                                                                >  1:1521841‑M2/66‑91 (MQ=255)

                         gCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATc                                                                   <  1:387845/91‑1 (MQ=255)

                          cTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCg                                                                  <  1:2856186/91‑1 (MQ=255)

                           tAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGt                                                                 <  1:2102110/91‑1 (MQ=255)

                            aGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTc                                                                <  1:3761496/91‑1 (MQ=255)

                            aGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTc                                                                >  1:1268897/1‑91 (MQ=255)

                            aGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTc                                                                <  1:3098354/91‑1 (MQ=255)

                              tatataaaataaagctccctgcaaagtttacatttttacaatgcttacttttgaagggag‑‑‑TATTTTATATAAAGTCATATATCGTCATAtt                                                           >  1:597147‑M2/61‑91 (MQ=255)

                              gACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCat                                                              >  1:2396096/1‑91 (MQ=255)

                              gACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCat                                                              >  1:1440838/1‑91 (MQ=255)

                               aCTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCata                                                             <  1:155738/91‑1 (MQ=255)

                                cTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCatat                                                            <  1:739005/91‑1 (MQ=255)

                                    ataaaataCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATAttttt                                                        <  1:3145517/91‑1 (MQ=255)

                                     taaaataCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTta                                                       >  1:1574305/1‑91 (MQ=255)

                                       aaataCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTtata                                                     >  1:1046028/1‑91 (MQ=255)

                                       aaataCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTtata                                                     >  1:122703/1‑91 (MQ=255)

                                        aataCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATaa                                                    >  1:847278/1‑91 (MQ=255)

                                         atagTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAg                                                   >  1:3338305‑M1/5‑91 (MQ=255)

                                         ataCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAg                                                   <  1:1789340/91‑1 (MQ=255)

                                          taCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGt                                                  >  1:1639903/1‑91 (MQ=255)

                                           aCTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGtt                                                 >  1:436866/1‑91 (MQ=255)

                                             tccctgcaaagtttacatttttacaatgcttacttttgaagggagCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGa                                               >  1:2303460‑M2/46‑91 (MQ=255)

                                              CCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGAt                                              <  1:38462‑M1/91‑1 (MQ=255)

                                                CTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTg                                            <  1:2662408‑M1/91‑1 (MQ=255)

                                                  tCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGtt                                          <  1:531271/91‑1 (MQ=255)

                                                  tCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGtt                                          <  1:1311362/91‑1 (MQ=255)

                                                    aaagtttacatttttacaatgcttacttttgaagggagCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCt                                        >  1:1342060‑M2/39‑91 (MQ=255)

                                                     aaaGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTa                                       >  1:1651452/1‑91 (MQ=255)

                                                      aaGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATCTCGTCATATTTTTATAAGTTGATTGTTCTaa                                      >  1:3810575/1‑91 (MQ=255)

                                                        gTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAAt                                    >  1:2545969/1‑91 (MQ=255)

                                                        gTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAAt                                    <  1:3630090/91‑1 (MQ=255)

                                                        gTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAAt                                    >  1:1281963/1‑91 (MQ=255)

                                                         tAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAAtt                                   >  1:2468978/1‑91 (MQ=255)

                                                         tAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAAtt                                   <  1:802718/91‑1 (MQ=255)

                                                             cATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCt                               >  1:196755/1‑91 (MQ=255)

                                                             cATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCt                               <  1:3319766/91‑1 (MQ=255)

                                                             cATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCt                               <  1:659570/91‑1 (MQ=255)

                                                             cATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCt                               >  1:2642266/1‑91 (MQ=255)

                                                             cATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCt                               >  1:2642535/1‑91 (MQ=255)

                                                             cATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGATCTAAATTACCt                               >  1:745812/1‑91 (MQ=255)

                                                              aTTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTa                              <  1:3718227/91‑1 (MQ=255)

                                                                tGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACa                            <  1:68097/91‑1 (MQ=255)

                                                                tGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACa                            <  1:2409281/91‑1 (MQ=255)

                                                                 gTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAg                           >  1:115988/1‑91 (MQ=255)

                                                                 gTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAg                           >  1:3244318/1‑91 (MQ=255)

                                                                  tAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGt                          <  1:2166357/91‑1 (MQ=255)

                                                                    aaaaTGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGa                        >  1:1785555/1‑91 (MQ=255)

                                                                    aaaaTGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGa                        <  1:1547427/91‑1 (MQ=255)

                                                                      aaTGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGaca                      >  1:1439086/1‑91 (MQ=255)

                                                                        tGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACAcc                    <  1:1853765/91‑1 (MQ=255)

                                                                        tGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACAcc                    <  1:1852925/91‑1 (MQ=255)

                                                                        tGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACAcc                    >  1:1752061/1‑91 (MQ=255)

                                                                          tAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCaa                  >  1:2132055/1‑91 (MQ=255)

                                                                           aaaCTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAAt                 <  1:2041349/91‑1 (MQ=255)

                                                                           aaaCTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAAt                 >  1:2885914/1‑91 (MQ=255)

                                                                           aaaCTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAAt                 >  1:3623060/1‑91 (MQ=255)

                                                                           aaaCTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAAt                 <  1:1615926/91‑1 (MQ=255)

                                                                            aaCTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATa                >  1:3770542/1‑91 (MQ=255)

                                                                            aaCTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATa                >  1:3504953/1‑91 (MQ=255)

                                                                            aaCTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATa                >  1:3472713/1‑91 (MQ=255)

                                                                             aCTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATAGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATaa               >  1:180881/1‑91 (MQ=255)

                                                                                  gCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATAAGTCGa          >  1:728222/1‑91 (MQ=255)

                                                                                     gggagCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATAAGTCGAAtt       <  1:2170026‑M2/86‑1 (MQ=255)

                                                                                      ggagCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATAAGTCGAATTg      >  1:334284‑M2/5‑91 (MQ=255)

                                                                                       gagCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATAAGTCGAATTgg     <  1:1812700‑M2/88‑1 (MQ=255)

                                                                                       gagCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATAAGTCGAATTgg     <  1:172349‑M2/88‑1 (MQ=255)

                                                                                          cTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATAAGTCGAATTGGTAc  <  1:2305477/91‑1 (MQ=255)

                                                                                          cTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATAAGTCGAATTGGTAc  <  1:2767978/91‑1 (MQ=255)

TATGGTAAAAATCTAAAAGATAAAGGCTAGGACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCATATATCGTCATATTTTTATAAGTTGATTGTTCTAAATTACCTACAGTGACACCAATAAGTCGAATTGGTAC  >  USA300TCH1516_ALE/2036414‑2036594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.