| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2051385 | 114 (1.160) | 6 (0.060) | 4/152 | NT | 5.2% | coding (908/2193 nt) | pcrA | ATP‑dependent DNA helicase PcrA |
| ? | USA300TCH1516_ALE | = 2051416 | 112 (1.200) | coding (877/2193 nt) | pcrA | ATP‑dependent DNA helicase PcrA | |||||
CGTATTACAAATTCCGCTTCATCACGTTCCGTCATTGCTTCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2051292‑2051385‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctAACGAAGTGATTAAAAATAATTCTGAACGTAAGCCAAAAGGACTGTGGACTGCAAATACGAATGGTGAGAAAATTCATTACTATGAAGC < USA300TCH1516_ALE/2051416‑2051328 CGTATTACAAATTCCGCTTCATCACGTTCCGTCATTGCTTCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTG < 1:1190128/91‑1CGTATTACAAATTCCGCTTCATCACGTTCCGTCATTGCTTCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTG < 1:1263789/91‑1CGTATTACAAATTCCGCTTCATCACGTTCCGTCATTGCTTCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTG > 1:3068371/1‑91CGTATTACAAATTCCGCTTCATCACGTTCCGTCATTGCTTCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTG > 1:3068493/1‑91CGTATTACAAATTCCGCTTCATCACGTTCCGTCATTGCTTCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTG > 1:3069154/1‑91CGTATTACAAATTCCGCTTCATCACGTTCCGTCATTGCTTCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTG < 1:3251862/91‑1 GTATTACAAATTCCGCTTCATCACGTTCCGTCATTGCTTCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGG < 1:4048859/91‑1 ATTATAAATTCCGCTTCATCACGTTCCGTCATTGCTTCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCT < 1:3460162/91‑1 ATTAGAAATTCCGCTTCATCACGTTCCGTCATTGCTTCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCT < 1:3459579/91‑1 ATTACAAATTCCGCTTCATCACGTTCCGTCATTGCTTCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCT < 1:456578/91‑1 ATTGCTTCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTAACGAAGTGATTAAAAATAATTCTGAACGT < 1:3658009/91‑1 TTGCTTCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTAACGAAGTGATTAAAAATAATTCTGAACGTA < 1:354350/91‑1 TTGCTTCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTAACGAAGTGATTAAAAATAATTCTGAACGTA < 1:354334/91‑1 GCTTCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTAACGAAGTGATTAAAAATAATTCTGAACGTAAG < 1:579092/91‑1 GCTTCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTAACGAAGTGATTAAAAATAATTCTGAACGTAAG < 1:3566899/91‑1 TCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTAACGAAGTGATTAAAAATAATTCTGAACGTAAGCCA < 1:1722063/91‑1 GGCTAACGAAGTGATTAAAAATAATTCTGAACGTAAGCCAAAAGGACTGTGGACTGCAAATACGAATGGTGAGAAAATTCATTACTATGAA > 1:2326758/1‑91 GGCTAACGAAGTGATTAAAAATAATTCTGAACGTAAGCCAAAAGGACTGTGGACTGCAAATACGAATGGTGAGAAAATTCATTACTATGAA > 1:1828237/1‑91 GGCTAACGAAGTGATTAAAAATAATTCTGAACGTAAGCCAAAAGGACTGTGGACTGCAAATACGAATGGTGAGAAAATTCATTACTATGAA > 1:1828195/1‑91 GGCTAACGAAGTGATTAAAAATAATTCTGAACGTAAGCCAAAAGGACTGTGGACTGCAAATACGAATGGTGAGAAAATTCATTACTATGAA > 1:1157105/1‑91 GGCTAACGAAGTGATTAAAAATAATTCTGAACGTAAGCCAAAAGGACTGTGGACTGCAAATACGAATGGTGAGAAAATTCATTACTATGAA > 1:1034588/1‑91 CTAACGAAGTGATTAAAAATAATTCTGAACGTAAGCCAAAAGGACTGTGGACTGCAAATACGAATGGTGAGAAAATTCATTACTATGAAGC < 1:1877999/91‑1 CTAACGAAGTGATTAAAAATAATTCTGAACGTAAGCCAAAAGGACTGTGGACTGCAAATACGAATGGTGAGAAAATTCATTACTATGAAGC > 1:1414056/1‑91 CGTATTACAAATTCCGCTTCATCACGTTCCGTCATTGCTTCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2051292‑2051385‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctAACGAAGTGATTAAAAATAATTCTGAACGTAAGCCAAAAGGACTGTGGACTGCAAATACGAATGGTGAGAAAATTCATTACTATGAAGC < USA300TCH1516_ALE/2051416‑2051328 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |