BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2051385	114 (1.160)	6 (0.060)	4/152	NT	5.2%	coding (908/2193 nt)	pcrA	ATP‑dependent DNA helicase PcrA
*	?	USA300TCH1516_ALE	= 2051416	112 (1.200)	6 (0.060)	4/152	NT	5.2%	coding (877/2193 nt)	pcrA	ATP‑dependent DNA helicase PcrA

Only 100 of 144 total aligned reads displayed.

GCTTCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCTTTTTCAAATGATAAGAT  >  USA300TCH1516_ALE/2051328‑2051506

  ttCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTagcc                                                                                        >  1:1034588‑M2/1‑87 (MQ=255)

  ttCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTagcc                                                                                        >  1:1157105‑M2/1‑87 (MQ=255)

  ttCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTagcc                                                                                        >  1:2326758‑M2/1‑87 (MQ=255)

  ttCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTagcc                                                                                        >  1:1828237‑M2/1‑87 (MQ=255)

  ttCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTagcc                                                                                        >  1:1828195‑M2/1‑87 (MQ=255)

   tCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCg                                                                                       <  1:2574609/91‑1 (MQ=255)

    cATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGc                                                                                      >  1:1007869/1‑91 (MQ=255)

    cATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGc                                                                                      <  1:1641456/91‑1 (MQ=255)

    cATAGTAATGAATTTTCTCACCATTCGTATTTACAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGc                                                                                      >  1:16623/1‑91 (MQ=255)

     aTAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCa                                                                                     >  1:2422977/1‑91 (MQ=255)

     aTAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCa                                                                                     >  1:1199504/1‑91 (MQ=255)

     aTAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCa                                                                                     >  1:1199967/1‑91 (MQ=255)

     aTAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCa                                                                                     <  1:86695/91‑1 (MQ=255)

       aGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCAtt                                                                                   >  1:1920213/1‑91 (MQ=255)

           aTGACTTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTaaa                                                                               >  1:835825/1‑91 (MQ=255)

           aTGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTaaa                                                                               <  1:2157986/91‑1 (MQ=255)

           aTGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTaaa                                                                               >  1:835073/1‑91 (MQ=255)

              aaTTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATc                                                                            >  1:1160737/1‑91 (MQ=255)

              aaTTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATc                                                                            >  1:3186196/1‑91 (MQ=255)

               aTTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCg                                                                           >  1:1895122/1‑91 (MQ=255)

                 tttCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGtt                                                                         >  1:1950500/1‑91 (MQ=255)

                 tttCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGtt                                                                         <  1:378916/91‑1 (MQ=255)

                   tctcACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGtttt                                                                       >  1:3112968/1‑91 (MQ=255)

                    ctcACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTtc                                                                      >  1:3588982/1‑91 (MQ=255)

                     tcACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTtcg                                                                     >  1:1258476/1‑91 (MQ=255)

                      cACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTtcgt                                                                    <  1:1654301/91‑1 (MQ=255)

                       aCCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTtcgtc                                                                   >  1:3459963/1‑91 (MQ=255)

                       aCCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTtcgtc                                                                   <  1:1903776/91‑1 (MQ=255)

                       aCCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTtcgtc                                                                   >  1:3878703/1‑91 (MQ=255)

                        ccATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTtcgtcg                                                                  >  1:1189552/1‑91 (MQ=255)

                         cATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCCCTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGa                                                                 >  1:1353349/1‑91 (MQ=255)

                         cATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGa                                                                 >  1:3923690/1‑91 (MQ=255)

                         cATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGa                                                                 <  1:2077546/91‑1 (MQ=255)

                           ttCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAAc                                                               >  1:2870902/1‑91 (MQ=255)

                            tCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACg                                                              >  1:231628/1‑91 (MQ=255)

                            tCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACg                                                              <  1:41432/91‑1 (MQ=255)

                              gTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGAt                                                            >  1:3105900/1‑91 (MQ=255)

                              gTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGAt                                                            <  1:1759582/91‑1 (MQ=255)

                              gTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGAt                                                            <  1:3844624/91‑1 (MQ=255)

                               tATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATa                                                           >  1:2722140/1‑91 (MQ=255)

                                aTTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATaa                                                          >  1:3766541/1‑91 (MQ=255)

                                aTTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATaa                                                          >  1:3033437/1‑91 (MQ=255)

                                   tGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAAttt                                                       >  1:3845327/1‑91 (MQ=255)

                                    gCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAAtttt                                                      >  1:694297/1‑91 (MQ=255)

                                      aGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGc                                                    >  1:1415949/1‑91 (MQ=255)

                                       gTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGct                                                   >  1:550166/1‑91 (MQ=255)

                                       gTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGct                                                   >  1:4065633/1‑91 (MQ=255)

                                       gTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGct                                                   >  1:549891/1‑91 (MQ=255)

                                         ccACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGctct                                                 <  1:504232/91‑1 (MQ=255)

                                         ccACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGctct                                                 <  1:2701968/91‑1 (MQ=255)

                                          cacaGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTa                                                >  1:2200506/1‑91 (MQ=255)

                                            caGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTaaa                                              >  1:349488/1‑91 (MQ=255)

                                             aGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTaaaa                                             >  1:171632/1‑91 (MQ=255)

                                              gTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTaaaaa                                            <  1:1548078/91‑1 (MQ=255)

                                              gTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTaaaaa                                            >  1:607080/1‑91 (MQ=255)

                                               tCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAg                                           >  1:2678519/1‑91 (MQ=255)

                                                     tGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTa                                     <  1:2051841/91‑1 (MQ=255)

                                                     tGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTa                                     <  1:1769956/91‑1 (MQ=255)

                                                      ggCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTAt                                    <  1:160755/91‑1 (MQ=255)

                                                      ggCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTAt                                    <  1:1781391/91‑1 (MQ=255)

                                                        cTTACGTTCAGAATTATTTTTAATCACTTCGTTagccaaaaggactgtggactgcaaatacgaatggtgagaaaattcattactatgaagc                                  <  1:579092‑M2/91‑59 (MQ=255)

                                                        cTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTc                                  >  1:1616038/1‑91 (MQ=255)

                                                        cTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTc                                  >  1:566789/1‑91 (MQ=255)

                                                          tACGTTCAGAATTATTTTTAATCACTTCGTTagccaaaaggactgtggactgcaaatacgaatggtgagaaaattcattactatgaagcaa                                <  1:354350‑M2/91‑61 (MQ=255)

                                                           aCGTTCAGAATTATTTTTAATCACTTCGTTagccaaaaggactgtggactgcaaatacgaatggtgagaaaattcattactatgaagcaat                               <  1:3658009‑M2/91‑62 (MQ=255)

                                                           aCGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCt                               >  1:662124/1‑91 (MQ=255)

                                                            cGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCtt                              <  1:2570860/91‑1 (MQ=255)

                                                             gTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTc                             >  1:152041/1‑91 (MQ=255)

                                                                cAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTgg                          >  1:2990556/1‑91 (MQ=255)

                                                                  gAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGAt                        >  1:2542618/1‑91 (MQ=255)

                                                                  gAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGAt                        >  1:1683409/1‑91 (MQ=255)

                                                                   aaTTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATa                       <  1:1921842/91‑1 (MQ=255)

                                                                   aaTTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATa                       <  1:1920170/91‑1 (MQ=255)

                                                                    attattattAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAg                      >  1:3223834/1‑91 (MQ=255)

                                                                    attattattAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAg                      >  1:3223456/1‑91 (MQ=255)

                                                                      tattTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTc                    >  1:663730/1‑91 (MQ=255)

                                                                       attTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCt                   <  1:318037/91‑1 (MQ=255)

                                                                        tttttAATCTCTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATGGTATTCGCTTCTGGATAGTCtt                  <  1:101226/91‑1 (MQ=255)

                                                                        tttttAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCtt                  <  1:97471/91‑1 (MQ=255)

                                                                        tttttAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCtt                  >  1:2970357/1‑91 (MQ=255)

                                                                        tttttAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCtt                  >  1:3562676/1‑91 (MQ=255)

                                                                           ttAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCttttt               <  1:136349/91‑1 (MQ=255)

                                                                              aTCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCTTTTTCaa            >  1:2838657/1‑91 (MQ=255)

                                                                                 aCTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCTTTTTCAAATg         >  1:887853/1‑91 (MQ=255)

                                                                                 aCTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCTTTTTCAAATg         >  1:1405444/1‑91 (MQ=255)

                                                                                 aCTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCTTTTTCAAATg         >  1:2555302/1‑91 (MQ=255)

                                                                                 aCTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCTTTTTCAAATg         >  1:1405498/1‑91 (MQ=255)

                                                                                 aCTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCTTTTTCAAATg         >  1:1714655/1‑91 (MQ=255)

                                                                                  cTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCTTTTTCAAATGa        >  1:2010852/1‑91 (MQ=255)

                                                                                   ttCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCTTTTTCAAATGAt       <  1:3288005/91‑1 (MQ=255)

                                                                                   ttCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCTTTTTCAAATGAt       >  1:129088/1‑91 (MQ=255)

                                                                                   ttCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCTTTTTCAAATGAt       <  1:969825/91‑1 (MQ=255)

                                                                                   ttCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTACTCTAAAAAGATTGTATTCGCTTCTGGATAGTCTTTTTCAAATGAt       <  1:3287684/91‑1 (MQ=255)

                                                                                    tCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCTTTTTCAAATGATa      >  1:591772/1‑91 (MQ=255)

                                                                                    tCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCTTTTTCAAATGATa      <  1:711984/91‑1 (MQ=255)

                                                                                    tCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCTTTTTCAAATGATa      <  1:3957202/91‑1 (MQ=255)

                                                                                       ttAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCTTTTTCAAATGATAAGa   <  1:2327769/91‑1 (MQ=255)

                                                                                       ttAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCTTTTTCAAATGATAAGa   <  1:2419001/91‑1 (MQ=255)

                                                                                        tAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCTTTTTCAAATGATAAGat  >  1:710379/1‑91 (MQ=255)

                                                                                        tAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCTTTTTCAAATGATAAGat  >  1:3334601/1‑91 (MQ=255)

GCTTCATAGTAATGAATTTTCTCACCATTCGTATTTGCAGTCCACAGTCCTTTTGGCTTACGTTCAGAATTATTTTTAATCACTTCGTTAGCCGCATTTAAAATCGTTTTCGTCGAACGATAATTTTGCTCTAAAAAGATTGTATTCGCTTCTGGATAGTCTTTTTCAAATGATAAGAT  >  USA300TCH1516_ALE/2051328‑2051506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.