| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2053094 = | 111 (1.130) | 7 (0.080) | 4/144 | NT | 7.3% | intergenic (‑113/+59) | pcrB/trpR | Heptaprenylglyceryl phosphate synthase/Trp operon repressor |
| ? | USA300TCH1516_ALE | 2053141 = | 77 (0.870) | intergenic (‑160/+12) | pcrB/trpR | Heptaprenylglyceryl phosphate synthase/Trp operon repressor | |||||
ATGATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2053191‑2053094‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattgtttATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCTTCAC > USA300TCH1516_ALE/2053141‑2053230 ATGATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATC > 1:3787317/1‑91ATGATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATC < 1:3694610/91‑1ATGATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATC > 1:2472339/1‑91ATGATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATC > 1:2472435/1‑91 TGATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCA < 1:2326497/91‑1 GATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGGTAATCAT > 1:2071866/1‑91 GATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGCTAATCAT > 1:2071174/1‑91 GATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCAT < 1:1729080/91‑1 ATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATT < 1:3470759/91‑1 ATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATT < 1:3469007/91‑1 TTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTG < 1:1932564/91‑1 TTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGT > 1:299586/1‑91 TTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGT < 1:4126696/91‑1 TTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTT < 1:3565118/91‑1 ATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATC > 1:3034364/1‑91 ACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAA > 1:4029342/1‑91 CAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAA > 1:960529/1‑91 CAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAA > 1:559249/1‑91 CAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAA > 1:243828/1‑91 CAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAA > 1:3475620/1‑91 GGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCAT > 1:3569746/1‑91 ATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACG < 1:3775646/91‑1 TTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGC < 1:90690/91‑1 GTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCTT > 1:3734436/1‑91 GTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCTT > 1:1170287/1‑91 GTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCTT > 1:2915573/1‑91 TATCGTTCATTTATTATTCATTTGTATCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCTTCAC < 1:3844474/91‑1 ATGATTTTAGATCGTATGAATATTGAAACAAATGAATAATAAATGAACGATAAACAATGGTTATCTATCTGCACTAATAAGGTAGATAATCATTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2053191‑2053094‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattgtttATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCTTCAC > USA300TCH1516_ALE/2053141‑2053230 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |