BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2053094 =	111 (1.130)	7 (0.080)	4/144	NT	7.3%	intergenic (‑113/+59)	pcrB/trpR	Heptaprenylglyceryl phosphate synthase/Trp operon repressor
*	?	USA300TCH1516_ALE	2053141 =	77 (0.870)	7 (0.080)	4/144	NT	7.3%	intergenic (‑160/+12)	pcrB/trpR	Heptaprenylglyceryl phosphate synthase/Trp operon repressor

Only 100 of 116 total aligned reads displayed.

TATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCTTCACT  >  USA300TCH1516_ALE/2053051‑2053231

 gatcgtatgaatattgaaacaaatgaataataaatgaacgatAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTAt                                                                                           >  1:3034364‑M1/43‑91 (MQ=255)

 atGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTAt                                                                                           >  1:2184074/1‑91 (MQ=255)

  tGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATc                                                                                          <  1:2533265/91‑1 (MQ=255)

  tGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATc                                                                                          <  1:2836052/91‑1 (MQ=255)

  tGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATc                                                                                          <  1:1477710/91‑1 (MQ=255)

   gAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCg                                                                                         <  1:587721/91‑1 (MQ=255)

   gAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCg                                                                                         >  1:3041918/1‑91 (MQ=255)

       tttAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCa                                                                                     <  1:2820403/91‑1 (MQ=255)

         tAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCAtt                                                                                   <  1:1657802/91‑1 (MQ=255)

           aGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATtta                                                                                 >  1:2825992/1‑91 (MQ=255)

           aGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATtta                                                                                 >  1:2114827/1‑91 (MQ=255)

           aGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATtta                                                                                 <  1:3407127/91‑1 (MQ=255)

            gTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATttat                                                                                >  1:845442/1‑91 (MQ=255)

            gTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATttat                                                                                >  1:187260/1‑91 (MQ=255)

              tCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATttatta                                                                              <  1:3918706/91‑1 (MQ=255)

              tCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATttatta                                                                              >  1:2643668/1‑91 (MQ=255)

              tCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATttatta                                                                              <  1:1182160/91‑1 (MQ=255)

               cTTTTGCTCTGTAAATTTTTTCGTGAAAAAACAATGATTCTCTACCTTATTAGGGCAGATAGATAACCATTGTTTATCGTTCATTtattat                                                                             <  1:3865846/91‑1 (MQ=255)

               cTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTtattat                                                                             >  1:395504/1‑91 (MQ=255)

               cTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTtattat                                                                             <  1:1359225/91‑1 (MQ=255)

                ttttACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTattatt                                                                            <  1:1534522/91‑1 (MQ=255)

                  ttACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCa                                                                          <  1:304582/91‑1 (MQ=255)

                  ttACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCa                                                                          <  1:2224623/91‑1 (MQ=255)

                   tACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCAt                                                                         <  1:1122464/91‑1 (MQ=255)

                   tACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCAt                                                                         >  1:1973580/1‑91 (MQ=255)

                   tACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCAt                                                                         <  1:4125230/91‑1 (MQ=255)

                    aCTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCAtt                                                                        >  1:2117824/1‑91 (MQ=255)

                     ctctGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCAttt                                                                       <  1:3453110/91‑1 (MQ=255)

                      tctGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTg                                                                      >  1:292129/1‑91 (MQ=255)

                         gTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGttt                                                                   >  1:2129052/1‑91 (MQ=255)

                         gTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGttt                                                                   >  1:1539220/1‑91 (MQ=255)

                          tAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTc                                                                  >  1:2721984/1‑91 (MQ=255)

                              ttttttCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAata                                                              <  1:3952380/91‑1 (MQ=255)

                              ttttttCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAata                                                              <  1:3951900/91‑1 (MQ=255)

                               tttttCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGAGAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAatat                                                             <  1:1897697/91‑1 (MQ=255)

                                 tttCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTc                                                           >  1:1927638/1‑91 (MQ=255)

                                   tCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCAt                                                         <  1:2264152/91‑1 (MQ=255)

                                   tCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCAt                                                         <  1:2263980/91‑1 (MQ=255)

                                    cGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATa                                                        >  1:559077/1‑91 (MQ=255)

                                     gTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATAc                                                       <  1:2621194/91‑1 (MQ=255)

                                       gAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGa                                                     >  1:1720325/1‑91 (MQ=255)

                                         aaaaaCAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATc                                                   <  1:1369939/91‑1 (MQ=255)

                                         aaaaaCAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATc                                                   <  1:1369984/91‑1 (MQ=255)

                                          aaaaCAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCt                                                  <  1:1475043/91‑1 (MQ=255)

                                          aaaaCAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCt                                                  <  1:3413769/91‑1 (MQ=255)

                                          aaaaCAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCt                                                  <  1:1474914/91‑1 (MQ=255)

                                            AACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTaa                                                <  1:3565118‑M1/91‑1 (MQ=255)

                                             acaatggttatctatctgcactaataaggtagataatcattgtttATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTaaa                                               >  1:4029342‑M2/46‑91 (MQ=255)

                                             ACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTaaa                                               >  1:299586‑M1/1‑91 (MQ=255)

                                              caatggttatctatctgcactaataaggtagataatcattgtttATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTaaaa                                              >  1:559249‑M2/45‑91 (MQ=255)

                                              caatggttatctatctgcactaataaggtagataatcattgtttATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTaaaa                                              >  1:3475620‑M2/45‑91 (MQ=255)

                                              caatggttatctatctgcactaataaggtagataatcattgtttATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTaaaa                                              >  1:243828‑M2/45‑91 (MQ=255)

                                              caatggttatctatctgcactaataaggtagataatcattgtttATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTaaaa                                              >  1:960529‑M2/45‑91 (MQ=255)

                                              CAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTaaaa                                              <  1:1932564‑M1/91‑1 (MQ=255)

                                               AATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAAt                                             <  1:3469007‑M1/91‑1 (MQ=255)

                                                ATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATc                                            <  1:1729080‑M1/91‑1 (MQ=255)

                                                ATGATTAGCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATc                                            >  1:2071174‑M1/1‑91 (MQ=255)

                                                ATGATTACCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATc                                            >  1:2071866‑M1/1‑91 (MQ=255)

                                                 TGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCa                                           <  1:2326497‑M1/91‑1 (MQ=255)

                                                  ggttatctatctgcactaataaggtagataatcattgtttATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCAt                                          >  1:3569746‑M2/41‑91 (MQ=255)

                                                  GATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCAt                                          >  1:2472435‑M1/1‑91 (MQ=255)

                                                  GATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCAt                                          >  1:3787317‑M1/1‑91 (MQ=255)

                                                  GATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCAt                                          <  1:3694610‑M1/91‑1 (MQ=255)

                                                  GATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCAt                                          >  1:2472339‑M1/1‑91 (MQ=255)

                                                       tCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGtat                                     <  1:460979/91‑1 (MQ=255)

                                                        cTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGtata                                    >  1:2754553/1‑91 (MQ=255)

                                                         tACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCGTTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATaa                                   >  1:580394/1‑91 (MQ=255)

                                                           ccTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGc                                 <  1:3555785/91‑1 (MQ=255)

                                                           ccTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGc                                 <  1:3555814/91‑1 (MQ=255)

                                                           ccTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGc                                 <  1:3558576/91‑1 (MQ=255)

                                                           ccTTATTAGTGCAGATAGATAACCAGTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGc                                 <  1:3870351/91‑1 (MQ=255)

                                                            cTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGca                                >  1:3882079/1‑91 (MQ=255)

                                                            cTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGca                                <  1:4133111/91‑1 (MQ=255)

                                                            cTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGca                                <  1:3730739/91‑1 (MQ=255)

                                                             ttattaGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGcat                               >  1:2937924/1‑91 (MQ=255)

                                                                ttaGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGcatcat                            >  1:3203705/1‑91 (MQ=255)

                                                                ttaGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGcatcat                            <  1:3905392/91‑1 (MQ=255)

                                                                  aGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTa                          >  1:1484304/1‑91 (MQ=255)

                                                                  aGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTa                          >  1:125057/1‑91 (MQ=255)

                                                                  aGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTa                          <  1:933503/91‑1 (MQ=255)

                                                                    tGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTAcc                        >  1:3127595/1‑91 (MQ=255)

                                                                     gCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTAccc                       >  1:3040967/1‑91 (MQ=255)

                                                                      cAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTAcccc                      <  1:302294/91‑1 (MQ=255)

                                                                      cAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTAcccc                      >  1:793504/1‑91 (MQ=255)

                                                                       agatagatAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCa                     >  1:3025922/1‑91 (MQ=255)

                                                                        gatagataACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCAt                    >  1:2263795/1‑91 (MQ=255)

                                                                        gatagataACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCAt                    <  1:3796502/91‑1 (MQ=255)

                                                                        gatagataACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCAt                    >  1:312838/1‑91 (MQ=255)

                                                                         atagataACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCAtt                   <  1:3116284/91‑1 (MQ=255)

                                                                            gataACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTa                <  1:3975753/91‑1 (MQ=255)

                                                                            gataACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTa                >  1:3388060/1‑91 (MQ=255)

                                                                             ataACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTaa               >  1:3097169/1‑91 (MQ=255)

                                                                                aCCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGa            >  1:807581/1‑91 (MQ=255)

                                                                                   attgtttATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACg         <  1:3775646‑M2/84‑1 (MQ=255)

                                                                                    ttgtttATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGc        <  1:90690‑M2/85‑1 (MQ=255)

                                                                                      gtttATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCtt      >  1:1170287‑M2/5‑91 (MQ=255)

                                                                                      gtttATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCtt      >  1:3734436‑M2/5‑91 (MQ=255)

                                                                                         tATCGTTCATTTATTATTCATTTGTATCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCTTCAc   <  1:3844474‑M2/90‑1 (MQ=255)

                                                                                          aTCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCTTCAct  <  1:2355729/91‑1 (MQ=255)

                                                                                          aTCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCTTCAct  >  1:3938668/1‑91 (MQ=255)

TATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCTAAAATCATTGTATAAGCATCATTACCCCATTGTAATGAACGCTTCACT  >  USA300TCH1516_ALE/2053051‑2053231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.