BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2053094 =	111 (1.130)	7 (0.080)	4/144	NT	7.3%	intergenic (‑113/+59)	pcrB/trpR	Heptaprenylglyceryl phosphate synthase/Trp operon repressor
*	?	USA300TCH1516_ALE	2053141 =	77 (0.870)	7 (0.080)	4/144	NT	7.3%	intergenic (‑160/+12)	pcrB/trpR	Heptaprenylglyceryl phosphate synthase/Trp operon repressor

Only 100 of 138 total aligned reads displayed.

ATACATATGATTATAGCATTTTTAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCT  >  USA300TCH1516_ALE/2053004‑2053183

atacataTGATTATAGCATTTTTAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGaaaa                                                                                           >  1:3085902/1‑91 (MQ=255)

atacataTGATTATAGCATTTTTAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGaaaa                                                                                           >  1:1393829/1‑91 (MQ=255)

 tacataTGATTATAGCATTTTTAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGaaaaa                                                                                          <  1:918853/91‑1 (MQ=255)

   cataTGATTATAGCATTTTTAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAAc                                                                                        <  1:1163230/91‑1 (MQ=255)

   cataTGATTATAGCATTTTTAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAAc                                                                                        >  1:4017208/1‑91 (MQ=255)

   aagcgttcattacaatggggtaatgatgcttatacaatgattttagatcgtatgaatattgaaacaaatgaataataaatgaacgatAAAc                                                                                        >  1:2915573‑M1/88‑91 (MQ=255)

   aagcgttcattacaatggggtaatgatgcttatacaatgattttagatcgtatgaatattgaaacaaatgaataataaatgaacgatAAAc                                                                                        >  1:3734436‑M1/88‑91 (MQ=255)

   aagcgttcattacaatggggtaatgatgcttatacaatgattttagatcgtatgaatattgaaacaaatgaataataaatgaacgatAAAc                                                                                        >  1:1170287‑M1/88‑91 (MQ=255)

    atatGATTATAGCATTTTTAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACa                                                                                       <  1:2613841/91‑1 (MQ=255)

     tatGATTATAGCATTTTTAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACaa                                                                                      >  1:3891094/1‑91 (MQ=255)

     gcgttcattacaatggggtaatgatgcttatacaatgattttagatcgtatgaatattgaaacaaatgaataataaatgaacgatAAACaa                                                                                      <  1:90690‑M1/6‑1 (MQ=255)

      cgttcattacaatggggtaatgatgcttatacaatgattttagatcgtatgaatattgaaacaaatgaataataaatgaacgatAAACAAt                                                                                     <  1:3775646‑M1/7‑1 (MQ=255)

       tGATTATAGCATTTTTAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATg                                                                                    <  1:3189836/91‑1 (MQ=255)

       tGATTATAGCATTTTTAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATg                                                                                    >  1:1762581/1‑91 (MQ=255)

          ttATAGCATTTTTAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGAtt                                                                                 <  1:712392/91‑1 (MQ=255)

            ataGCATTTTTAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTAt                                                                               >  1:3982227/1‑91 (MQ=255)

            ataGCATTTTTAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTAt                                                                               >  1:512561/1‑91 (MQ=255)

              aGCATTTTTAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCt                                                                             <  1:2705477/91‑1 (MQ=255)

              aGCATTTTTAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCt                                                                             <  1:2705586/91‑1 (MQ=255)

                cATTTTTAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTAc                                                                           <  1:2447131/91‑1 (MQ=255)

                cATTTTTAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTAc                                                                           <  1:2447146/91‑1 (MQ=255)

                 aTTTTTAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTAcc                                                                          <  1:534084/91‑1 (MQ=255)

                  tttttAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCt                                                                         <  1:430805/91‑1 (MQ=255)

                  tttttAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCt                                                                         <  1:822905/91‑1 (MQ=255)

                      tAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCttatt                                                                     >  1:1962507/1‑91 (MQ=255)

                      tAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCttatt                                                                     <  1:2630303/91‑1 (MQ=255)

                      tAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCttatt                                                                     >  1:283915/1‑91 (MQ=255)

                        aGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAg                                                                   <  1:2095199/91‑1 (MQ=255)

                         gtgtCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGt                                                                  >  1:1827638/1‑91 (MQ=255)

                          tgtCGAGTTCTAAAGACTTAATATGGAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTg                                                                 <  1:3861255/91‑1 (MQ=255)

                          tgtCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTg                                                                 <  1:2407094/91‑1 (MQ=255)

                            tCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCa                                                               >  1:702179/1‑91 (MQ=255)

                             cGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCag                                                              <  1:2675737/91‑1 (MQ=255)

                                gTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCagata                                                           >  1:2861251/1‑91 (MQ=255)

                                 ttCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCagatag                                                          <  1:192105/91‑1 (MQ=255)

                                 ttCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCagatag                                                          <  1:1114380/91‑1 (MQ=255)

                                   cTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCagatagat                                                        <  1:2143759/91‑1 (MQ=255)

                                   cTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCagatagat                                                        <  1:82077/91‑1 (MQ=255)

                                   cTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCagatagat                                                        <  1:3994081/91‑1 (MQ=255)

                                   cTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATGATCTACCTTATTAGTGCagatagat                                                        <  1:3994046/91‑1 (MQ=255)

                                    tAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAgatagata                                                       >  1:3052556/1‑91 (MQ=255)

                                     aaaGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATaa                                                      >  1:1263093/1‑91 (MQ=255)

                                       atgattttagatcgtatgaatattgaaacaaatgaataataaatgaacgatAAACAATGATTATCTACCTTATTAGTGCAGATAGATAAcc                                                    >  1:3569746‑M1/52‑91 (MQ=255)

                                       aGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAAcc                                                    <  1:2386561/91‑1 (MQ=255)

                                       aGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAAcc                                                    <  1:642586/91‑1 (MQ=255)

                                        gACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCa                                                   <  1:2742035/91‑1 (MQ=255)

                                        gACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCa                                                   <  1:612278/91‑1 (MQ=255)

                                          cTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCAtt                                                 <  1:1659643/91‑1 (MQ=255)

                                          cTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCAtt                                                 >  1:437027/1‑91 (MQ=255)

                                           ttttagatcgtatgaatattgaaacaaatgaataataaatgaacgatAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTg                                                >  1:243828‑M1/48‑91 (MQ=255)

                                           ttAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTg                                                <  1:3666695/91‑1 (MQ=255)

                                           ttAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTg                                                >  1:1598770/1‑91 (MQ=255)

                                           ttAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTg                                                <  1:2543257/91‑1 (MQ=255)

                                           ttAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTg                                                <  1:3951730/91‑1 (MQ=255)

                                            tttagatcgtatgaatattgaaacaaatgaataataaatgaacgatAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGt                                               >  1:4029342‑M1/47‑91 (MQ=255)

                                             aaTATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGtt                                              <  1:2985263/91‑1 (MQ=255)

                                              atatGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGttt                                             <  1:987352/91‑1 (MQ=255)

                                                gatcgtatgaatattgaaacaaatgaataataaatgaacgatAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTAt                                           >  1:3034364‑M1/43‑91 (MQ=255)

                                                atGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTAt                                           >  1:2184074/1‑91 (MQ=255)

                                                 tGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATc                                          <  1:2836052/91‑1 (MQ=255)

                                                 tGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATc                                          <  1:2533265/91‑1 (MQ=255)

                                                 tGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATc                                          <  1:1477710/91‑1 (MQ=255)

                                                  gAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCg                                         >  1:3041918/1‑91 (MQ=255)

                                                  gAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCg                                         <  1:587721/91‑1 (MQ=255)

                                                      tttAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCa                                     <  1:2820403/91‑1 (MQ=255)

                                                      tttAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCa                                     >  1:3951824/1‑91 (MQ=255)

                                                        tAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCAtt                                   <  1:1657802/91‑1 (MQ=255)

                                                          aGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATtta                                 <  1:3407127/91‑1 (MQ=255)

                                                           gTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATttat                                >  1:187260/1‑91 (MQ=255)

                                                           gTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATttat                                >  1:845442/1‑91 (MQ=255)

                                                             tCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATttatta                              <  1:1182160/91‑1 (MQ=255)

                                                             tCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATttatta                              >  1:2643418/1‑91 (MQ=255)

                                                              cTTTTGCTCTGTAAATTTTTTCGTGAAAAAACAATGATTCTCTACCTTATTAGGGCAGATAGATAACCATTGTTTATCGTTCATTtattat                             <  1:3865846/91‑1 (MQ=255)

                                                              cTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTtattat                             >  1:395504/1‑91 (MQ=255)

                                                              cTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTtattat                             <  1:3808480/91‑1 (MQ=255)

                                                              cTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTtattat                             <  1:1359225/91‑1 (MQ=255)

                                                               ttttACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTattatt                            <  1:1534522/91‑1 (MQ=255)

                                                                 ttACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCa                          <  1:2224623/91‑1 (MQ=255)

                                                                  tACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCAt                         <  1:1122464/91‑1 (MQ=255)

                                                                  tACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCAt                         <  1:4125230/91‑1 (MQ=255)

                                                                  tACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCAt                         >  1:1973580/1‑91 (MQ=255)

                                                                   aCTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCAtt                        >  1:2117824/1‑91 (MQ=255)

                                                                   aCTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCAtt                        >  1:2117825/1‑91 (MQ=255)

                                                                    ctctGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCAttt                       <  1:3453110/91‑1 (MQ=255)

                                                                     tctGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTg                      >  1:292129/1‑91 (MQ=255)

                                                                        gTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGttt                   >  1:2129052/1‑91 (MQ=255)

                                                                        gTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGttt                   >  1:1539220/1‑91 (MQ=255)

                                                                        gTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGttt                   >  1:742047/1‑91 (MQ=255)

                                                                           aaTTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATCACCATTGTTTATCGTTCATTTATTATTCATTTGTTTcca                >  1:1402514/1‑89 (MQ=255)

                                                                             ttttttCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAata              <  1:3952380/91‑1 (MQ=255)

                                                                                tttCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTc           >  1:1927638/1‑91 (MQ=255)

                                                                                  tCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCAt         <  1:2263980/91‑1 (MQ=255)

                                                                                  tCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCAt         <  1:2264152/91‑1 (MQ=255)

                                                                                   cGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATa        >  1:559077/1‑91 (MQ=255)

                                                                                     tGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACg      <  1:976358/91‑1 (MQ=255)

                                                                                      gAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGa     >  1:1720325/1‑91 (MQ=255)

                                                                                        aaaaaCAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATc   <  1:1369939/91‑1 (MQ=255)

                                                                                        aaaaaCAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATc   <  1:1553792/91‑1 (MQ=255)

                                                                                         aaaaCAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCt  <  1:1474914/91‑1 (MQ=255)

                                                                                         aaaaCAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCt  <  1:3413769/91‑1 (MQ=255)

ATACATATGATTATAGCATTTTTAAGTGTCGAGTTCTAAAGACTTAATATGAAATTTAAGTTCTTTTACTCTGTAAATTTTTTCGTGAAAAAACAATGATTATCTACCTTATTAGTGCAGATAGATAACCATTGTTTATCGTTCATTTATTATTCATTTGTTTCAATATTCATACGATCT  >  USA300TCH1516_ALE/2053004‑2053183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.