| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2082368 = | 104 (1.060) | 9 (0.110) | 5/138 | NT | 9.6% | intergenic (+9/+315) | aspC/USA300HOU_RS10520 | Aspartate aminotransferase/65 kDa membrane protein |
| ? | USA300TCH1516_ALE | 2082406 = | 79 (0.930) | intergenic (+47/+277) | aspC/USA300HOU_RS10520 | Aspartate aminotransferase/65 kDa membrane protein | |||||
CAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2082468‑2082368‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTA > USA300TCH1516_ALE/2082406‑2082494 CAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAG > 1:85687/1‑91CAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAG > 1:677178/1‑91CAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAG > 1:27999/1‑91CAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAG > 1:2788949/1‑91CAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAG > 1:1378859/1‑91CAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAG > 1:943292/1‑91CAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAG > 1:677492/1‑91CAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAG > 1:943202/1‑91CAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAG > 1:86014/1‑91CAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAG > 1:85742/1‑91CAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAG > 1:85726/1‑91 AAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGA < 1:2586471/91‑1 AGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGAT > 1:2434144/1‑91 AGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGAT > 1:2432939/1‑91 AGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGAT > 1:955647/1‑91 TTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCCTCAGATTA > 1:48728/1‑91 TTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTA < 1:3752020/91‑1 TGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTAT < 1:1198592/91‑1 GAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGT < 1:422107/91‑1 GAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATCGGT > 1:3213985/1‑91 GAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATCGGT > 1:3215317/1‑91 GAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCACATTATTGGT > 1:3971395/1‑91 AATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATA > 1:704319/1‑91 AATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATA > 1:1115280/1‑91 AAACCAATAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGACATATTTTAT > 1:1643543/1‑91 AACCAATAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATT > 1:2707429/1‑91 AACCAATAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATT > 1:1231744/1‑91 AACCAATAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATT > 1:1231684/1‑91 CCAATAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATACGATATATTTTATTCA > 1:1342890/1‑91 CCAATAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCA > 1:176176/1‑91 ATAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCA > 1:3246453/1‑91 GATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAA < 1:3057785/91‑1 GATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAA > 1:664256/1‑91 GATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAA > 1:664507/1‑91 GATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAA > 1:2950599/1‑91 ATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAT < 1:3025288/91‑1 ATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAT < 1:3025141/91‑1 ATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAT < 1:2028868/91‑1 TTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATT < 1:3110181/91‑1 TTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATT < 1:1819703/91‑1 TTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATT > 1:2118309/1‑91 TTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTCGTCAAACACTATACCTAATT < 1:2691851/91‑1 TTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTCGTCAAACACTATACCTAATT < 1:2690143/91‑1 TATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTA < 1:1477314/91‑1 ATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTCTCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAG > 1:214600/1‑91 TTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGT < 1:96329/91‑1 TGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTT > 1:3557710/1‑91 TGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTT > 1:1839541/1‑91 TGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTT > 1:3492400/1‑91 GGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTT < 1:56366/91‑1 GGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTT > 1:965875/1‑91 GTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTT > 1:1206302/1‑91 TTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTA > 1:3612393/1‑91 CAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2082468‑2082368‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTA > USA300TCH1516_ALE/2082406‑2082494 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |