BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2082368 =	104 (1.060)	9 (0.110)	5/138	NT	9.6%	intergenic (+9/+315)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein
*	?	USA300TCH1516_ALE	2082406 =	79 (0.930)	9 (0.110)	5/138	NT	9.6%	intergenic (+47/+277)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein

Only 100 of 145 total aligned reads displayed.

ATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATA  >  USA300TCH1516_ALE/2082316‑2082496

ataaaatatgtcttatgatactttgaaagaaggaataattttaaaaataaaaAACCAATAATCTGATGAGTATGACTCGGATTATTGGttt                                                                                            >  1:1643543‑M1/53‑91 (MQ=255)

  gTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGttttt                                                                                          >  1:3758216/1‑91 (MQ=255)

     tttGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttat                                                                                       >  1:1749333/1‑91 (MQ=255)

      ttGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttatt                                                                                      >  1:459201/1‑91 (MQ=255)

      tatatcttatgatactttgaaagaaggaataattttaaaaataaaaAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttatt                                                                                      >  1:1115280‑M1/47‑91 (MQ=255)

       tGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttattt                                                                                     <  1:2653286/91‑1 (MQ=255)

         aTTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttattttt                                                                                   <  1:1318645/91‑1 (MQ=255)

          ttCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttattttta                                                                                  <  1:3294015/91‑1 (MQ=255)

           tCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTaa                                                                                 <  1:404301/91‑1 (MQ=255)

            cAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTaaa                                                                                <  1:2536956/91‑1 (MQ=255)

             aaTTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTaaaa                                                                               <  1:1857939/91‑1 (MQ=255)

             aaTTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTaaaa                                                                               >  1:681292/1‑91 (MQ=255)

              aTTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTACAat                                                                              >  1:3221500/1‑91 (MQ=255)

              aTTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAat                                                                              >  1:2373048/1‑91 (MQ=255)

              aTTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAat                                                                              >  1:309609/1‑91 (MQ=255)

                tGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAatta                                                                            <  1:2340958/91‑1 (MQ=255)

                  cTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAattatt                                                                          >  1:4074422/1‑91 (MQ=255)

                    aaaGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTcc                                                                        >  1:37493/1‑91 (MQ=255)

                      aGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCctt                                                                      >  1:3565805/1‑91 (MQ=255)

                        cGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCcttct                                                                    >  1:2852447/1‑91 (MQ=255)

                        cGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCcttct                                                                    >  1:1839764/1‑91 (MQ=255)

                           ttGATGACTTAAGCTAATTAATTTCAACCAATAATCTGATGAGCATGACGCGGCTCCTCGGGTTTTTATTTTTAAACTTATTCCTtctctc                                                                 >  1:3467479/1‑91 (MQ=255)

                           ttGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTc                                                                 <  1:601062/91‑1 (MQ=255)

                           ttGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTc                                                                 >  1:2935283/1‑91 (MQ=255)

                           ttGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTc                                                                 <  1:4133201/91‑1 (MQ=255)

                            tgatgaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCa                                                                >  1:3555880/1‑91 (MQ=255)

                             gatgaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCaa                                                               <  1:1639341/91‑1 (MQ=255)

                               tgaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAg                                                             >  1:184009/1‑91 (MQ=255)

                               tgaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAg                                                             <  1:2751536/91‑1 (MQ=255)

                                  cTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTAt                                                          >  1:397621/1‑91 (MQ=255)

                                     aaGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCAt                                                       >  1:709001/1‑91 (MQ=255)

                                     aaGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCAt                                                       >  1:718935/1‑91 (MQ=255)

                                      aGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATa                                                      >  1:2549721/1‑91 (MQ=255)

                                       gATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATaa                                                     >  1:851572/1‑91 (MQ=255)

                                       gATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATaa                                                     >  1:1794074/1‑91 (MQ=255)

                                        aTAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAg                                                    <  1:779372/91‑1 (MQ=255)

                                        aTAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAg                                                    <  1:3227172/91‑1 (MQ=255)

                                          aattaattTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGat                                                  >  1:1381812/1‑91 (MQ=255)

                                          aattaattTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGat                                                  >  1:3655640/1‑91 (MQ=255)

                                           attaattTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGata                                                 >  1:242573/1‑91 (MQ=255)

                                            ttaattTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAatatat                                                >  1:3459594/1‑91 (MQ=255)

                                            ttaattTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGatat                                                >  1:2516220/1‑91 (MQ=255)

                                            ttaattTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGatat                                                >  1:2899640/1‑91 (MQ=255)

                                             aataaaaaaccaataatccgagtcatactcatcagattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGatata                                               >  1:1115280‑M2/46‑91 (MQ=255)

                                             aataaaaaaccaataatccgagtcatactcatcagattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGatata                                               >  1:704319‑M2/46‑91 (MQ=255)

                                              aattTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGatatat                                              <  1:3191348/91‑1 (MQ=255)

                                                 ttCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATAtttt                                           >  1:3584315/1‑91 (MQ=255)

                                                   cAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTAt                                         <  1:1172549/91‑1 (MQ=255)

                                                    aaccaataatccgagtcatactcatcagattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTAtt                                        >  1:1231684‑M2/39‑91 (MQ=255)

                                                    aaccaataatccgagtcatactcatcagattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTAtt                                        >  1:2707429‑M2/39‑91 (MQ=255)

                                                     ACCGATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTc                                       >  1:3213985‑M1/1‑91 (MQ=255)

                                                     ACCAATAATGTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTc                                       >  1:3971395‑M1/1‑91 (MQ=255)

                                                     ACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTc                                       <  1:422107‑M1/91‑1 (MQ=255)

                                                      ccaataatccgagtcatactcatcagattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATACGATATATTTTATTCa                                      >  1:1342890‑M2/37‑91 (MQ=255)

                                                         ataatccgagtcatactcatcagattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCa                                   >  1:3246453‑M2/34‑91 (MQ=255)

                                                          TAATCTGAGGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCaa                                  >  1:48728‑M1/1‑91 (MQ=255)

                                                            ATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACt                                >  1:2434144‑M1/1‑91 (MQ=255)

                                                            ATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACt                                >  1:955647‑M1/1‑91 (MQ=255)

                                                            ATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACt                                >  1:2432939‑M1/1‑91 (MQ=255)

                                                             TCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACtt                               <  1:2586471‑M1/91‑1 (MQ=255)

                                                              CTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTg                              >  1:1378859‑M1/1‑91 (MQ=255)

                                                              CTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTg                              >  1:943202‑M1/1‑91 (MQ=255)

                                                              CTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTg                              >  1:677492‑M1/1‑91 (MQ=255)

                                                              CTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTg                              >  1:86014‑M1/1‑91 (MQ=255)

                                                              CTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTg                              >  1:85742‑M1/1‑91 (MQ=255)

                                                              CTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTg                              >  1:943292‑M1/1‑91 (MQ=255)

                                                              CTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTg                              >  1:85687‑M1/1‑91 (MQ=255)

                                                              CTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTg                              >  1:2788949‑M1/1‑91 (MQ=255)

                                                               tgatgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGt                             >  1:2543900/1‑91 (MQ=255)

                                                                  tgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTGAAAGTATCATAAGCTATATTTTATTCAGCAACTTGTCaa                          >  1:3851736/1‑91 (MQ=255)

                                                                  tgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCaa                          >  1:3380349/1‑91 (MQ=255)

                                                                  tgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCaa                          <  1:2760784/91‑1 (MQ=255)

                                                                  tgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCaa                          <  1:3695657/91‑1 (MQ=255)

                                                                    aGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAac                        <  1:2101636/91‑1 (MQ=255)

                                                                        tGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACta                    <  1:1754740/91‑1 (MQ=255)

                                                                         gACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACtat                   >  1:1683968/1‑91 (MQ=255)

                                                                          aCTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACtata                  <  1:3101681/91‑1 (MQ=255)

                                                                          aCTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACtata                  <  1:3878952/91‑1 (MQ=255)

                                                                          aCTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACtata                  >  1:1168410/1‑91 (MQ=255)

                                                                            tCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATAcc                <  1:796531/91‑1 (MQ=255)

                                                                              ggATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTa              <  1:1001074/91‑1 (MQ=255)

                                                                              ggATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTa              <  1:1658030/91‑1 (MQ=255)

                                                                               gattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTaa             >  1:664256‑M2/12‑91 (MQ=255)

                                                                               gattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTaa             >  1:664507‑M2/12‑91 (MQ=255)

                                                                               gattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTaa             >  1:2950599‑M2/12‑91 (MQ=255)

                                                                                attattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAt            <  1:3025288‑M2/81‑1 (MQ=255)

                                                                                attattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAt            <  1:3025141‑M2/81‑1 (MQ=255)

                                                                                attattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAt            <  1:2028868‑M2/81‑1 (MQ=255)

                                                                                 ttattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAtt           <  1:3110181‑M2/82‑1 (MQ=255)

                                                                                 ttattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAtt           >  1:2118309‑M2/10‑91 (MQ=255)

                                                                                 ttattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAtt           <  1:1819703‑M2/82‑1 (MQ=255)

                                                                                 ttattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTCGTCAAACACTATACCTAAtt           <  1:2691851‑M2/82‑1 (MQ=255)

                                                                                  tattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTa          <  1:1477314‑M2/83‑1 (MQ=255)

                                                                                    ttggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGt        <  1:96329‑M2/85‑1 (MQ=255)

                                                                                     tggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGtt       >  1:1839541‑M2/6‑91 (MQ=255)

                                                                                     tggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGtt       >  1:3492400‑M2/6‑91 (MQ=255)

                                                                                      ggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGttt      <  1:56366‑M2/87‑1 (MQ=255)

                                                                                       gttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGtttt     >  1:1206302‑M2/4‑91 (MQ=255)

                                                                                        ttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTta    >  1:3612393‑M2/3‑91 (MQ=255)

                                                                                          ttttatttttaAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTtata  <  1:571220/91‑1 (MQ=255)

ATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATA  >  USA300TCH1516_ALE/2082316‑2082496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.