| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2117484 | 95 (0.970) | 6 (0.070) | 4/144 | NT | 6.1% | coding (805/921 nt) | USA300HOU_RS10775 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 2117504 | 100 (1.130) | coding (785/921 nt) | USA300HOU_RS10775 | hypothetical protein | |||||
TTTCTTTTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2117388‑2117484‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaagaacAATTGGACTTTGAACAACCAGTTCTTGAAGAAGCACAATACACAGAATTAGAAAATGATAAGCCTATTGATGTATCTGACTTTGAAGAAA < USA300TCH1516_ALE/2117504‑2117415 TTTCTTTTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTC < 1:1756269/91‑1TTTCTTTTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTC < 1:1756351/91‑1TTTCTTTTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTC < 1:1846834/91‑1 CTTTTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAG < 1:3900172/91‑1 TTTTTCTGTTGCAGGTTCTTTTATTTCTTCAGAGTCAGATACATGAATAGGCTGATCGTTTTCTAATTCTGTGTATTGTGCTTCTTCAAGA < 1:3312907/91‑1 TTTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAA > 1:746929/1‑91 TTTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAA < 1:3900023/91‑1 TTTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAA < 1:3420970/91‑1 TTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAAC > 1:1406560/1‑91 ATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACAATTGGACTTTGAACAACCA < 1:934657/91‑1 ATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACAATTGGACTTTGAACAACCA < 1:2417326/91‑1 TTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACAATTGGACTTTGAACAACCAGT < 1:905049/91‑1 TCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACAATTGGACTTTGAACAACCAGTT < 1:3887017/91‑1 CTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACAATTGGACTTTGAACAACCAGTTC < 1:3330105/91‑1 CTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACAATTGGACTTTGAACAACCAGTTC < 1:3330604/91‑1 CAAGAACAATTGGACTTTGAACAACCAGTTCTTGAAGAAGCACAATACACAGAATTAGAAAATGATAAGCCTATTGATGTATCTGACTTTG < 1:2163067/91‑1 ACAATTGGACTTTGAACAACCAGTTCTTGAAGAAGCACAATACACAGAATTAGAAAATGATAAGCCTATTGATGTATCTGACTTTGAAGAA < 1:497853/91‑1 ACAATTGGACTTTGAACAACCAGTTCTTGAAGAAGCACAATACACAGAATTAGAAAATGATAAGCCTATTGATGTATCTGACTTTGAAGAA > 1:660068/1‑91 ACAATTGGACTTTGAACAACCAGTTCTTGAAGAAGCACAATACACAGAATTAGAAAATGATAAGCCTATTGATGTATCTGACTTTGAAGAA > 1:1168628/1‑91 CAATTGGACTTTGAACAACCAGTTCTTGAAGAAGCACAATACACAGAATTAGAAAATGATAAGCCTATTGATGTATCTGACTTTGAAGAAA < 1:3193392/91‑1 CAATTGGACTTTGAACAACCAGTTCTTGAAGAAGCACAATACACAGAATTAGAAAATGATAAGCCTATTGATGTATCTGACTTTGAAGAAA < 1:1870473/91‑1 CAATTGGACTTTGAACAACCAGTTCTTGAAGAAGCACAATACACAGAATTAGAAAATGATAAGCCTATTGATGTATCTGACTTTGAAGAAA < 1:647801/91‑1 CAATTGGACTTTGAACAACCAGTTCTTGAAGAAGCACAATACACAGAATTAGAAAATGATAAGCCTATGGATGTATCTGACTTTGAAGAAA < 1:1500801/91‑1 TTTCTTTTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2117388‑2117484‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaagaacAATTGGACTTTGAACAACCAGTTCTTGAAGAAGCACAATACACAGAATTAGAAAATGATAAGCCTATTGATGTATCTGACTTTGAAGAAA < USA300TCH1516_ALE/2117504‑2117415 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |