BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2117484	95 (0.970)	6 (0.070)	4/144	NT	6.1%	coding (805/921 nt)	USA300HOU_RS10775	hypothetical protein
*	?	USA300TCH1516_ALE	= 2117504	100 (1.130)	6 (0.070)	4/144	NT	6.1%	coding (785/921 nt)	USA300HOU_RS10775	hypothetical protein

Only 100 of 131 total aligned reads displayed.

ATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGCGTATTTGAAAAGATTGC  >  USA300TCH1516_ALE/2117414‑2117594

aTTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAAtt                                                                                            >  1:2962443/1‑91 (MQ=255)

aTTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAAtt                                                                                            >  1:1574621/1‑91 (MQ=255)

 tttCTTCAAAGTCAGATACATCCATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTg                                                                                           <  1:1500801‑M2/91‑2 (MQ=255)

 tttCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTg                                                                                           <  1:1870473‑M2/91‑2 (MQ=255)

 tttCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTg                                                                                           <  1:3193392‑M2/91‑2 (MQ=255)

  ttcttcAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTgt                                                                                          >  1:660068‑M2/1‑89 (MQ=255)

  ttcttcAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTgt                                                                                          >  1:1168628‑M2/1‑89 (MQ=255)

       cAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTgttcttg                                                                                     <  1:2163067‑M2/91‑8 (MQ=255)

         aaGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGAt                                                                                   >  1:733809/1‑91 (MQ=255)

          aGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGAtt                                                                                  >  1:702326/1‑91 (MQ=255)

          aGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGAtt                                                                                  >  1:2108468/1‑91 (MQ=255)

            tccgATACATCAATAGGCTTATCAGTTTCTAATTCAGTGTATTGTGCTTCTTCAAGATCTGGTTGTTCAAAGACCAATTGTTCTTGATTTg                                                                                <  1:1079433/88‑1 (MQ=255)

            tCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTg                                                                                >  1:2652751/1‑91 (MQ=255)

              aGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGGTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCa                                                                              <  1:3311602/91‑1 (MQ=255)

              aGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCa                                                                              <  1:1315792/91‑1 (MQ=255)

              aGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCa                                                                              >  1:700540/1‑91 (MQ=255)

              aGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCa                                                                              >  1:700665/1‑91 (MQ=255)

               gATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCAt                                                                             >  1:790636/1‑91 (MQ=255)

                aTACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCAtt                                                                            >  1:3390505/1‑91 (MQ=255)

                aTACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCAtt                                                                            >  1:2789790/1‑91 (MQ=255)

                aTACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCAtt                                                                            <  1:3006780/91‑1 (MQ=255)

                 tACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCAttt                                                                           >  1:1277249/1‑91 (MQ=255)

                  aCATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCAtttt                                                                          <  1:1469099/91‑1 (MQ=255)

                  aCATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCAtttt                                                                          <  1:381416/91‑1 (MQ=255)

                    aTCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTttct                                                                        <  1:1168110/91‑1 (MQ=255)

                    aTCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTttct                                                                        <  1:2009967/91‑1 (MQ=255)

                     tCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTttctt                                                                       <  1:3644103/91‑1 (MQ=255)

                     tCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTttctt                                                                       <  1:3644052/91‑1 (MQ=255)

                       aaTAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCa                                                                     >  1:2924259/1‑91 (MQ=255)

                         tAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAAc                                                                   <  1:1469058/91‑1 (MQ=255)

                              ttATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTg                                                              <  1:3562700/91‑1 (MQ=255)

                              ttATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTg                                                              <  1:4052205/91‑1 (MQ=255)

                                 tCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGt                                                           >  1:4133747/1‑91 (MQ=255)

                                 tCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGt                                                           >  1:3886218/1‑91 (MQ=255)

                                     tttCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCaa                                                       <  1:3405347/91‑1 (MQ=255)

                                     tttCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCaa                                                       <  1:617017/91‑1 (MQ=255)

                                     tttCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCaa                                                       <  1:950039/91‑1 (MQ=255)

                                        cTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAacac                                                    >  1:1816428/1‑91 (MQ=255)

                                         tAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACAct                                                   >  1:1224218/1‑91 (MQ=255)

                                          aaTTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACActt                                                  <  1:2576249/91‑1 (MQ=255)

                                             tCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACActtctt                                               >  1:3153723/1‑91 (MQ=255)

                                             tCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACActtctt                                               >  1:1693070/1‑91 (MQ=255)

                                             tCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACActtctt                                               >  1:85661/1‑91 (MQ=255)

                                                gtgtATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGc                                            >  1:4063682/1‑91 (MQ=255)

                                                 tgtATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCg                                           >  1:2489056/1‑91 (MQ=255)

                                                  gtATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGt                                          <  1:1473637/91‑1 (MQ=255)

                                                       gtgCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACg                                     >  1:438074/1‑91 (MQ=255)

                                                       gtgCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACg                                     >  1:819516/1‑91 (MQ=255)

                                                       gtgCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACg                                     >  1:2874659/1‑91 (MQ=255)

                                                       gtgCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACg                                     >  1:2874582/1‑91 (MQ=255)

                                                        tgCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACgt                                    >  1:316652/1‑91 (MQ=255)

                                                        tgCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACgt                                    >  1:316686/1‑91 (MQ=255)

                                                         gCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACgtt                                   >  1:591212/1‑91 (MQ=255)

                                                         gCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACgtt                                   >  1:1634994/1‑91 (MQ=255)

                                                         gCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTCCTGCGTCCAACACTTCTTTGCGTTGACgtt                                   >  1:2892941/1‑91 (MQ=255)

                                                         gCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATATTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACgtt                                   <  1:3596170/91‑1 (MQ=255)

                                                          cttcttCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCATTGACgttg                                  >  1:3968235/1‑91 (MQ=255)

                                                           ttcttcAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACgttgt                                 <  1:3159105/91‑1 (MQ=255)

                                                           ttcttcAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACgttgt                                 <  1:3159036/91‑1 (MQ=255)

                                                           ttcttcAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACgttgt                                 <  1:2949415/91‑1 (MQ=255)

                                                           ttcttcAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACgttgt                                 <  1:2949589/91‑1 (MQ=255)

                                                           gtcttcAAGAACTGGTTGGACAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACGTCTGCGTCCAACACTTCTTTGCGTTGACgttgt                                 <  1:2949715/90‑1 (MQ=255)

                                                             cttcAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTc                               <  1:2598353/91‑1 (MQ=255)

                                                             cttcAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTc                               >  1:2775464/1‑91 (MQ=255)

                                                              ttcAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCg                              <  1:4139912/91‑1 (MQ=255)

                                                              ttcAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCg                              <  1:4139945/91‑1 (MQ=255)

                                                                cAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGa                            >  1:2256361/1‑91 (MQ=255)

                                                                 aaGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGAt                           >  1:674314/1‑91 (MQ=255)

                                                                   gAACTGGTTGTTCAAAGTCCAATTgttcttgaagaagcacaatacacagaattagaaaatgataagcctattgatgtatctgactttgaag                         <  1:3330105‑M2/91‑68 (MQ=255)

                                                                   gAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTc                         >  1:1599905/1‑91 (MQ=255)

                                                                    aaCTGGTTGTTCAAAGTCCAATTgttcttgaagaagcacaatacacagaattagaaaatgataagcctattgatgtatctgactttgaaga                        <  1:3887017‑M2/91‑69 (MQ=255)

                                                                    aaCTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCt                        <  1:3465890/91‑1 (MQ=255)

                                                                       tGGTTGTTCAAAGTCCAATTgttcttgaagaagcacaatacacagaattagaaaatgataagcctattgatgtatctgactttgaagaaat                     <  1:934657‑M2/91‑72 (MQ=255)

                                                                       tGGTTGTTCAAAGTCCAATTgttcttgaagaagcacaatacacagaattagaaaatgataagcctattgatgtatctgactttgaagaaat                     <  1:2417326‑M2/91‑72 (MQ=255)

                                                                        ggTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTtgtg                    >  1:2828258/1‑91 (MQ=255)

                                                                         gttgttCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGc                   >  1:4102969/1‑91 (MQ=255)

                                                                         gttgttCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGc                   >  1:110168/1‑91 (MQ=255)

                                                                         gttgttCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGc                   <  1:2194731/91‑1 (MQ=255)

                                                                         gttgttCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGc                   <  1:3618200/91‑1 (MQ=255)

                                                                         gttgttCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGc                   <  1:2196672/91‑1 (MQ=255)

                                                                         gttgttCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGc                   >  1:110182/1‑91 (MQ=255)

                                                                          ttgttCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGCg                  <  1:3926101/91‑1 (MQ=255)

                                                                          ttgttCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGCg                  <  1:1328416/91‑1 (MQ=255)

                                                                          ttgttCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGCg                  <  1:2203820/91‑1 (MQ=255)

                                                                           tgttCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGCGt                 >  1:4029711/1‑91 (MQ=255)

                                                                            gttCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGCGTa                >  1:1125020/1‑91 (MQ=255)

                                                                               cAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGCGTAttt             <  1:1871280/91‑1 (MQ=255)

                                                                                aaaGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGCGTATTTg            <  1:2704218/91‑1 (MQ=255)

                                                                                aaaGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGCGTATTTg            >  1:1784884/1‑91 (MQ=255)

                                                                                 aaGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGTTTCTTGTGCGTATTTGa           <  1:2951655/91‑1 (MQ=255)

                                                                                   gTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGCGTATTTGaaa         >  1:2361529/1‑91 (MQ=255)

                                                                                   gTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGCGTATTTGaaa         >  1:4112686/1‑91 (MQ=255)

                                                                                    tCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGCGTATTTGaaaa        <  1:3301266/91‑1 (MQ=255)

                                                                                        aTTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGCGTATTTGAAAAGAtt    <  1:592290/91‑1 (MQ=255)

                                                                                        aTTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGCGTATTTGAAAAGAtt    <  1:592590/91‑1 (MQ=255)

                                                                                        aTTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGCGTATTTGAAAAGAtt    >  1:1553084/1‑91 (MQ=255)

                                                                                         ttGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGCGTATTTGAAAAGATTg   >  1:269657/1‑91 (MQ=255)

                                                                                         ttGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGCGTATTTGAAAAGATTg   >  1:2698152/1‑91 (MQ=255)

                                                                                         ttGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGCGTATTTGAAAAGATTg   >  1:3260763/1‑91 (MQ=255)

                                                                                          tGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGCGTATTTGAAAAGATTGc  <  1:976255/91‑1 (MQ=255)

ATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTGTGCGTATTTGAAAAGATTGC  >  USA300TCH1516_ALE/2117414‑2117594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.