BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2117484	95 (0.970)	6 (0.070)	4/144	NT	6.1%	coding (805/921 nt)	USA300HOU_RS10775	hypothetical protein
*	?	USA300TCH1516_ALE	= 2117504	100 (1.130)	6 (0.070)	4/144	NT	6.1%	coding (785/921 nt)	USA300HOU_RS10775	hypothetical protein

Only 100 of 136 total aligned reads displayed.

TTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTG  >  USA300TCH1516_ALE/2117394‑2117574

tttCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAAC                                                                                            >  1:1406560‑M1/1‑91 (MQ=255)

  tCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTg                                                                                          >  1:750712/1‑91 (MQ=255)

   cTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTgg                                                                                         >  1:703166/1‑91 (MQ=255)

   cTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTgg                                                                                         <  1:3387958/91‑1 (MQ=255)

   cTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTgg                                                                                         <  1:3025868/91‑1 (MQ=255)

   cTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTgg                                                                                         <  1:2130836/91‑1 (MQ=255)

   cTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTgg                                                                                         <  1:2130477/91‑1 (MQ=255)

    tGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGgt                                                                                        <  1:1125450/91‑1 (MQ=255)

        gCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGgttgtt                                                                                    >  1:3095961/1‑91 (MQ=255)

        gCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGgttgtt                                                                                    >  1:3093299/1‑91 (MQ=255)

         cAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTc                                                                                   <  1:2727329/91‑1 (MQ=255)

           ggTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCaa                                                                                 <  1:741045/91‑1 (MQ=255)

               cTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTc                                                                             >  1:2222938/1‑91 (MQ=255)

               cTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTc                                                                             >  1:2223043/1‑91 (MQ=255)

                 tttATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCa                                                                           >  1:1997623/1‑91 (MQ=255)

                  ttATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCaa                                                                          >  1:2621607/1‑91 (MQ=255)

                  ttATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCaa                                                                          >  1:2621478/1‑91 (MQ=255)

                   tATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAAt                                                                         <  1:2176065/91‑1 (MQ=255)

                    aTTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACaattggactttgaacaacca                                                                        <  1:934657‑M1/91‑21 (MQ=255)

                    aTTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACaattggactttgaacaacca                                                                        <  1:2417326‑M1/91‑21 (MQ=255)

                    aTTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAAtt                                                                        >  1:1574621/1‑91 (MQ=255)

                    aTTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAAtt                                                                        >  1:2962443/1‑91 (MQ=255)

                     tttCTTCAAAGTCAGATACATCCATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTg                                                                       <  1:1500801‑M2/91‑2 (MQ=255)

                     tttCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTg                                                                       <  1:1870473‑M2/91‑2 (MQ=255)

                     tttCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTg                                                                       <  1:647801‑M2/91‑2 (MQ=255)

                     tttCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTg                                                                       <  1:3193392‑M2/91‑2 (MQ=255)

                      ttcttcAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACaattggactttgaacaaccagt                                                                      <  1:905049‑M1/91‑23 (MQ=255)

                      ttcttcAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTgt                                                                      <  1:497853‑M2/91‑3 (MQ=255)

                      ttcttcAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTgt                                                                      >  1:1168628‑M2/1‑89 (MQ=255)

                       tcttcAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACaattggactttgaacaaccagtt                                                                     <  1:3887017‑M1/91‑24 (MQ=255)

                        cttcAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACaattggactttgaacaaccagttc                                                                    <  1:3330105‑M1/91‑25 (MQ=255)

                        cttcAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACaattggactttgaacaaccagttc                                                                    <  1:3330604‑M1/91‑25 (MQ=255)

                           cAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTgttcttg                                                                 <  1:2163067‑M2/91‑8 (MQ=255)

                              aGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGAtt                                                              >  1:702326/1‑91 (MQ=255)

                              aGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGAtt                                                              >  1:2108468/1‑91 (MQ=255)

                                tccgATACATCAATAGGCTTATCAGTTTCTAATTCAGTGTATTGTGCTTCTTCAAGATCTGGTTGTTCAAAGACCAATTGTTCTTGATTTg                                                            <  1:1079433/88‑1 (MQ=255)

                                tCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTg                                                            >  1:2652982/1‑91 (MQ=255)

                                  aGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCa                                                          >  1:700540/1‑91 (MQ=255)

                                  aGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCa                                                          >  1:1496892/1‑91 (MQ=255)

                                  aGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCa                                                          >  1:700665/1‑91 (MQ=255)

                                  aGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCa                                                          <  1:1315792/91‑1 (MQ=255)

                                    aTACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCAtt                                                        >  1:3390505/1‑91 (MQ=255)

                                    aTACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCAtt                                                        >  1:2789790/1‑91 (MQ=255)

                                     tACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCAttt                                                       >  1:1277249/1‑91 (MQ=255)

                                      aCATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCAtttt                                                      <  1:1469099/91‑1 (MQ=255)

                                        aTCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTttct                                                    <  1:2009967/91‑1 (MQ=255)

                                         tCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTttctt                                                   <  1:3644103/91‑1 (MQ=255)

                                         tCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTttctt                                                   <  1:3644052/91‑1 (MQ=255)

                                         tCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTttctt                                                   >  1:1141344/1‑91 (MQ=255)

                                           aaTAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCa                                                 >  1:2924259/1‑91 (MQ=255)

                                                  ttATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTg                                          <  1:3562700/91‑1 (MQ=255)

                                                  ttATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTg                                          <  1:4052205/91‑1 (MQ=255)

                                                     tCATTTTCTAATTCTGTGTATTGTGTTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGt                                       >  1:3104286/1‑91 (MQ=255)

                                                     tCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGt                                       >  1:3886218/1‑91 (MQ=255)

                                                     tCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGt                                       >  1:4136272/1‑91 (MQ=255)

                                                         tttCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCaa                                   <  1:950039/91‑1 (MQ=255)

                                                         tttCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCaa                                   >  1:3266110/1‑91 (MQ=255)

                                                         tttCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCaa                                   <  1:1619587/91‑1 (MQ=255)

                                                          ttCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAac                                  >  1:3877994/1‑91 (MQ=255)

                                                            cTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAacac                                >  1:1816428/1‑91 (MQ=255)

                                                            cTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAacac                                >  1:3641768/1‑91 (MQ=255)

                                                             tAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACAct                               >  1:1224218/1‑91 (MQ=255)

                                                              aaTTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACActt                              <  1:2576248/91‑1 (MQ=255)

                                                                 tCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACActtctt                           >  1:85661/1‑91 (MQ=255)

                                                                 tCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACActtctt                           >  1:3153723/1‑91 (MQ=255)

                                                                 tCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACActtctt                           >  1:1693070/1‑91 (MQ=255)

                                                                    gtgtATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGc                        >  1:4063682/1‑91 (MQ=255)

                                                                    gtgtATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGc                        >  1:4064500/1‑91 (MQ=255)

                                                                     tgtATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCg                       >  1:2489056/1‑91 (MQ=255)

                                                                      gtATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGt                      <  1:1473637/91‑1 (MQ=255)

                                                                        aTTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTg                    <  1:2929900/91‑1 (MQ=255)

                                                                           gtgCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACg                 >  1:819516/1‑91 (MQ=255)

                                                                           gtgCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACg                 >  1:2874659/1‑91 (MQ=255)

                                                                           gtgCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACg                 >  1:2874582/1‑91 (MQ=255)

                                                                            tgCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACgt                >  1:316652/1‑91 (MQ=255)

                                                                            tgCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACgt                >  1:316629/1‑91 (MQ=255)

                                                                             gCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACgtt               >  1:591212/1‑91 (MQ=255)

                                                                             gCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACgtt               >  1:1634994/1‑91 (MQ=255)

                                                                              cttcttCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACgttg              >  1:3968254/1‑91 (MQ=255)

                                                                              cttcttCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCATTGACgttg              >  1:3968235/1‑91 (MQ=255)

                                                                               ttcttcAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACgttgt             <  1:2949415/91‑1 (MQ=255)

                                                                               ttcttcAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACgttgt             <  1:2949734/91‑1 (MQ=255)

                                                                               ttcttcAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACgttgt             <  1:3159105/91‑1 (MQ=255)

                                                                               gtcttcAAGAACTGGTTGGACAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACGTCTGCGTCCAACACTTCTTTGCGTTGACgttgt             <  1:2949715/90‑1 (MQ=255)

                                                                                tcttcAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACgttgtt            <  1:781111/91‑1 (MQ=255)

                                                                                 cttcAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTc           <  1:2598353/91‑1 (MQ=255)

                                                                                  ttcAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCg          <  1:4139912/91‑1 (MQ=255)

                                                                                  ttcAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCg          <  1:4139945/91‑1 (MQ=255)

                                                                                    cAAGAACaattggactttgaacaaccagttcttgaagaagcacaatacacagaattagaaaatgataagcctattgatgtatctgactttg        <  1:2163067‑M1/91‑85 (MQ=255)

                                                                                    cAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGa        >  1:2256361/1‑91 (MQ=255)

                                                                                     aaGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGAt       >  1:674314/1‑91 (MQ=255)

                                                                                       gAACTGGTTGTTCAAAGTCCAATTgttcttgaagaagcacaatacacagaattagaaaatgataagcctattgatgtatctgactttgaag     <  1:3330105‑M2/91‑68 (MQ=255)

                                                                                        aaCTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCt    <  1:3468091/91‑1 (MQ=255)

                                                                                        aaCTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCt    <  1:3465890/91‑1 (MQ=255)

                                                                                         aCaattggactttgaacaaccagttcttgaagaagcacaatacacagaattagaaaatgataagcctattgatgtatctgactttgaagaa   >  1:1168628‑M1/1‑2 (MQ=255)

                                                                                         aCaattggactttgaacaaccagttcttgaagaagcacaatacacagaattagaaaatgataagcctattgatgtatctgactttgaagaa   >  1:660068‑M1/1‑2 (MQ=255)

                                                                                         aCaattggactttgaacaaccagttcttgaagaagcacaatacacagaattagaaaatgataagcctattgatgtatctgactttgaagaa   <  1:497853‑M1/91‑90 (MQ=255)

                                                                                          caattggactttgaacaaccagttcttgaagaagcacaatacacagaattagaaaatgataagcctattgatgtatctgactttgaagaaa  <  1:1870473‑M1/91‑91 (MQ=255)

                                                                                          caattggactttgaacaaccagttcttgaagaagcacaatacacagaattagaaaatgataagcctattgatgtatctgactttgaagaaa  <  1:647801‑M1/91‑91 (MQ=255)

                                                                                          caattggactttgaacaaccagttcttgaagaagcacaatacacagaattagaaaatgataagcctattgatgtatctgactttgaagaaa  <  1:3193392‑M1/91‑91 (MQ=255)

TTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGGTTGTTCAAAGTCCAATTGTTCTTGATTTGCATTTTCTTCAACTTCTGCGTCCAACACTTCTTTGCGTTGACGTTGTTCGGATTCTTG  >  USA300TCH1516_ALE/2117394‑2117574

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.