| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2140331 = | 73 (0.740) | 4 (0.040) | 4/150 | NT | 5.7% | intergenic (‑771/+140) | USA300HOU_RS10910/groL | hypothetical protein/60 kDa chaperonin |
| ? | USA300TCH1516_ALE | 2140372 = | 65 (0.710) | intergenic (‑812/+99) | USA300HOU_RS10910/groL | hypothetical protein/60 kDa chaperonin | |||||
GTATGATTCATTCTAAGTATAAATTAGAATGCACGCAAATATATTTTAATTACGAGACGTCTTCCATTTGGTGACTAAACTTATGGGAGGCGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2140425‑2140331‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtctCGTAATTAAAATATATTTGCGTGCATTCTAATTTATACTTAGAATGAATCATACTCGTGCATAATGTAATTTTCTAGTTAGTCAAAACTA > USA300TCH1516_ALE/2140372‑2140461 GTATGATTCATTCTAAGTATAAATTAGAATGCACGCAAATATATTTTAATTACGAGACGTCTTCCATTTGGTGACTAAACTTATGGGAGGC < 1:1140517/91‑1GTATGATTCATTCTAAGTATAAATTAGAATGCACGCAAATATATTTTAATTACGAGACGTCTTCCATTTGGTGACTAAACTTATGGGAGGC < 1:1230920/91‑1GTATGATTCATTCTAAGTATAAATTAGAATGCACGCAAATATATTTTAATTACGAGACGTCTTCCATTTGGTGACTAAACTTATGGGAGGC < 1:1621837/91‑1GTATGATTCATTCTAAGTATAAATTAGAATGCACGCAAATATATTTTAATTACGAGACGTCTTCCATTTGGTGACTAAACTTATGGGAGGC < 1:328432/91‑1GTATGATTCATTCTAAGTATAAATTAGAATGCACGCAAATATATTTTAATTACGAGACGTCTTCCATTTGGTGACTAAACTTATGGGAGGC < 1:269306/91‑1 TATGATTCATTCTAAGTATAAATTAGAATGCACGCAAATATATTTTAATTACGAGACGTCTTCCATTTGGTGACTAAACTTATGGGAGGCG > 1:712801/1‑91 atggTTCATTCTAAGTATAAATTAGAATGCACGCAAATATATTTTAATTACGAGACGTCTTCCATTTGGTGACTAAACTTATGGGAGGCGT < 1:1339502/87‑1 ATGATTCATTCTAAGTATAAATTAGAATGCACGCAAATATATTTTAATTACGAGACGTCTTCCATTTGGTGACTAAACTTATGGGAGGCGT > 1:1477954/1‑91 ATGATTCATTCTAAGTATAAATTAGAATGCACGCAAATATATTTTAATTACGAGACGTCTTCCATTTGGTGACTAAACTTATGGGAGGCGT < 1:3909376/91‑1 ATGATTCATTCTAAGTATAAATTAGAATGCACGCAAATATATTTTAATTACGAGACGTCTTCCATTTGGTGACTAAACTTATGGGAGGCGT < 1:1781763/91‑1 TGATTCATTCTAAGTATAAATTAGAATGCACGCAAATATATTTTAATTACGAGACGTCTTCCATTTGGTGACTAAACTTATGGGAGGCGTC < 1:2298674/91‑1 CGTCTTCCATTTGGTGACTAAACTTATGGGAGGCGTCTCGTAATTAAAATATATTTGCGTGCATTCTAATTTATACTTAGAATGAATCATA > 1:1059757/1‑91 GTCTTCCATTTGGTGACTAAACTTATGGGAGGCGTCTCGTAATTAAAATATATTTGCGTGCATTCTAATTTATACTTAGAATGAATCATAC > 1:1559924/1‑91 TCCATTTGGTGACTAAACTTATGGGAGGCGTCTCGTAATTAAAATATATTTGCGTGCATTCTAATTTATACTTAGAATGAATCATACTCGT > 1:4045359/1‑91 CCATTTGGTGACTAAACTTATGGGAGGCGTCTCGTAATTAAAATATATTTGCGTGCATTCTAATTTATACTTAGAATGAATCATACTCGTG > 1:1474433/1‑91 GTCTCGTAATTAAAATATATTTGCGTGCATTCTAATTTATACTTAGAATGAATCATACTCGTGCATAATGTAATTTTCTAGTTAGTCAAAA > 1:3916574/1‑91 TCTCGTAATTAAAATATATTTGCGTGCATTCTAATTTATACTTAGAATGAATCATACTCGTGCATAATGTAATTTTCTAGTTAGTCAAAAC < 1:2654752/91‑1 TCGTAATTAAAATATATTTGCGTGCATTCTAATTTATACTTAGAATGAATCATACTCGTGCATAATGTAATTTTCTAGTTAGTCAAAACTA > 1:3722739/1‑91 TCGTAATTAAAATATATTTGCGTGCATTCTAATTTATACTTAGAATGAATCATACTCGTGCATAATGTAATTTTCTAGTTAGTCAAAACTA < 1:768616/91‑1 GTATGATTCATTCTAAGTATAAATTAGAATGCACGCAAATATATTTTAATTACGAGACGTCTTCCATTTGGTGACTAAACTTATGGGAGGCGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2140425‑2140331‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtctCGTAATTAAAATATATTTGCGTGCATTCTAATTTATACTTAGAATGAATCATACTCGTGCATAATGTAATTTTCTAGTTAGTCAAAACTA > USA300TCH1516_ALE/2140372‑2140461 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |