| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2141638 = | 78 (0.790) | 7 (0.080) | 6/148 | NT | 10.3% | coding (450/1617 nt) | groL | 60 kDa chaperonin |
| ? | USA300TCH1516_ALE | 2141666 = | 50 (0.550) | coding (422/1617 nt) | groL | 60 kDa chaperonin | |||||
ATCGACAAAGCAGTTAAAGTTGCTGTTGAAGCGTTACATGAAAATTCTCAAAAAGTTGAAAATAAAAATGAAATTGCGCAAGTAGGTGCGATTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2141733‑2141638‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTGGG > USA300TCH1516_ALE/2141666‑2141755 ATCGACAAAGCAGTTAAAGTTGCTGTTGAAGCGTTACATGAAAATTCTCAAAAAGTTGAAAATAAAAATGAAATTGCGCAAGTAGGTGCGA < 1:3883246/91‑1 TCGACAAAGCAGTTAAAGTTGCTGTTGAAGCGTTACATGAAAATTCTCAAAAAGTTGAAAATAAAAATGAAATTGCGCAAGTAGGTGCGAT > 1:3543652/1‑91 CGACAAAGCAGTTAAAGTTGCTGTTGAAGCGTTACATGAAAATTCTCAAAAAGTTGAAAATAAAAATGAAATTGCGCAAGTAGGTGCGATT > 1:3952978/1‑91 CGACAAAGCAGTTAAAGTTGCTGTTGAAGCGTTACATGAAAATTCTCAAAAAGTTGAAAATAAAAATGAAATTGCGCAAGTAGGTGCGATT > 1:2794883/1‑91 GAAAATAAAAATGAAATTGCGCAAGTAGGTGCGATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTT > 1:1609148/1‑91 TAAAAATGAAATTGCGCAAGTAGGTGCGATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACT > 1:833654/1‑91 AAAATGAAATTGCGCAAGTAGGTGCGATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGC > 1:1150489/1‑91 AAAATGAAATTGCGCAAGTAGGTGCGATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGC > 1:3212852/1‑91 tATGAAATTGCGCAAGTAGGTGCGATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTT < 1:917036/90‑1 AATGAAATTGCGCAAGTAGGTGCGATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTT > 1:690533/1‑91 AAATTGCGCAAGTAGGTGCGATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTC > 1:2318862/1‑91 ATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAA > 1:3693667/1‑91 ATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAA < 1:1103773/91‑1 TTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCATCTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAAC < 1:3497597/91‑1 TCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTG < 1:2431235/91‑1 TCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTG < 1:1979086/91‑1 TCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTG < 1:3698796/91‑1 TCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTG < 1:1979057/91‑1 ATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTGGG > 1:225561/1‑91 ATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTGGG < 1:1237529/91‑1 ATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTGGG < 1:3988499/91‑1 ATCGACAAAGCAGTTAAAGTTGCTGTTGAAGCGTTACATGAAAATTCTCAAAAAGTTGAAAATAAAAATGAAATTGCGCAAGTAGGTGCGATTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2141733‑2141638‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTGGG > USA300TCH1516_ALE/2141666‑2141755 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |