| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2141638 = | 78 (0.790) | 7 (0.080) | 6/148 | NT | 10.3% | coding (450/1617 nt) | groL | 60 kDa chaperonin |
| ? | USA300TCH1516_ALE | 2141666 = | 50 (0.550) | coding (422/1617 nt) | groL | 60 kDa chaperonin | |||||
CATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTGGG > USA300TCH1516_ALE/2141577‑2141755 | cATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtt < 1:564711/91‑1 (MQ=255)cATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtt < 1:2074830/91‑1 (MQ=255)cATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtt < 1:2606439/91‑1 (MQ=255)aagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCAATTTCata < 1:917036‑M1/30‑2 (MQ=255)aagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCAATTTCAtt > 1:690533‑M1/62‑91 (MQ=255) aTCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAttt > 1:2699173/1‑91 (MQ=255) tCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtttt > 1:4003869/1‑91 (MQ=255) gcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCAATTTCAtttt > 1:3212852‑M1/60‑91 (MQ=255) gcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCAATTTCAtttt > 1:1150489‑M1/60‑91 (MQ=255) cGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAttttt > 1:599311/1‑91 (MQ=255) agttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCAATTTCATTTTTa > 1:833654‑M1/58‑91 (MQ=255) ccTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTAtttt < 1:298613/91‑1 (MQ=255) cTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTc < 1:2991900/91‑1 (MQ=255) cTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTc > 1:2154583/1‑91 (MQ=255) aagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTc > 1:1609148‑M1/53‑91 (MQ=255) tttCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACttt > 1:306900/1‑91 (MQ=255) tCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACttttt < 1:2833734/91‑1 (MQ=255) ccATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTg > 1:2918032/1‑91 (MQ=255) ccATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTAAACTTTTTg > 1:3963214/1‑91 (MQ=255) cATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTga > 1:1114021/1‑91 (MQ=255) aTAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgag < 1:2841849/91‑1 (MQ=255) aTAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgag < 1:4884/91‑1 (MQ=255) aTAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgag > 1:2403016/1‑91 (MQ=255) aTAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgag < 1:3800088/91‑1 (MQ=255) aTAGCCTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgag > 1:1246838/1‑91 (MQ=255) tAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgaga > 1:1698070/1‑91 (MQ=255) tAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgaga > 1:1697933/1‑91 (MQ=255) aGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGaa > 1:704230/1‑91 (MQ=255) aGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGaa > 1:1484749/1‑91 (MQ=255) gCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAAt > 1:3796630/1‑91 (MQ=255) gCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAAt > 1:142293/1‑91 (MQ=255) cTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAAtt > 1:3843074/1‑91 (MQ=255) aaaTATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATg < 1:580624/91‑1 (MQ=255) aaTATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGt > 1:780778/1‑91 (MQ=255) aaTATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGt > 1:780717/1‑91 (MQ=255) aaTATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATATTCAACTTTTTGAGAATTTTCATGt > 1:3865837/1‑91 (MQ=255) atatAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTa < 1:2392707/91‑1 (MQ=255) atatAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTa < 1:151947/91‑1 (MQ=255) atatAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTa < 1:1791205/91‑1 (MQ=255) atatAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTa < 1:1791480/91‑1 (MQ=255) ataACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAAc < 1:281865/91‑1 (MQ=255) taACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACg > 1:456532/1‑91 (MQ=255) aCGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCt > 1:573459/1‑91 (MQ=255) ccAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCaa < 1:475911/91‑1 (MQ=255) cAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAAc > 1:566237/1‑91 (MQ=255) tttCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGc < 1:594089/91‑1 (MQ=255) tttCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGc > 1:3031650/1‑91 (MQ=255) cttcATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAAc > 1:2699704/1‑91 (MQ=255) tcATCTGCTGCTGAAATCGCGCCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACtt > 1:3666644/1‑91 (MQ=255) gaaaataaaaatgaaattgcgcaagtaggtgcgatttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACtt > 1:1609148‑M2/40‑91 (MQ=255) cATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACttt > 1:1476177/1‑91 (MQ=255) aTCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTa > 1:10243/1‑91 (MQ=255) tCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTaa < 1:2991971/91‑1 (MQ=255) tCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTaa < 1:2434393/91‑1 (MQ=255) tCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTaa < 1:2586470/91‑1 (MQ=255) taaaaatgaaattgcgcaagtaggtgcgatttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACt > 1:833654‑M2/35‑91 (MQ=255) ctgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGc < 1:2472720/91‑1 (MQ=255) aaaatgaaattgcgcaagtaggtgcgatttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGc > 1:3212852‑M2/33‑91 (MQ=255) aaaatgaaattgcgcaagtaggtgcgatttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGc > 1:1150489‑M2/33‑91 (MQ=255) tatgaaattgcgcaagtaggtgcgatttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCtt < 1:917036‑M2/61‑1 (MQ=255) aatgaaattgcgcaagtaggtgcgatttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCtt > 1:690533‑M2/31‑91 (MQ=255) aaattgcgcaagtaggtgcgatttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTc > 1:2318862‑M2/27‑91 (MQ=255) AATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCg > 1:3952978‑M1/1‑91 (MQ=255) AATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCg > 1:2794883‑M1/1‑91 (MQ=255) ATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGa > 1:3543652‑M1/1‑91 (MQ=255) TCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGAt < 1:3883246‑M1/91‑1 (MQ=255) aCCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCt < 1:592698/91‑1 (MQ=255) aCCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCt < 1:2336786/91‑1 (MQ=255) ccTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCtt > 1:2545438/1‑91 (MQ=255) ccTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCtt > 1:2054874/1‑91 (MQ=255) cTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTCTCGATACCTTg > 1:3755147/1‑91 (MQ=255) aCTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTc > 1:1373704/1‑91 (MQ=255) cTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCg < 1:779226/91‑1 (MQ=255) gcgcAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTaa > 1:2705557/1‑91 (MQ=255) gcgcAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTaa > 1:168731/1‑91 (MQ=255) gcgcAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTaa > 1:2304318/1‑91 (MQ=255) gcgcAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTaa > 1:2304144/1‑91 (MQ=255) cAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAAcc > 1:1573898/1‑91 (MQ=255) cAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAAcc < 1:3937991/91‑1 (MQ=255) cAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAAcc > 1:1791042/1‑91 (MQ=255) cAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAAcc < 1:87517/91‑1 (MQ=255) atttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCaa < 1:1103773‑M2/85‑1 (MQ=255) atttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCaa > 1:3693667‑M2/7‑91 (MQ=255) tttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCATCTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAAc < 1:3497597‑M2/86‑1 (MQ=255) tcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTg < 1:1979057‑M2/88‑1 (MQ=255) tcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTg < 1:1979086‑M2/88‑1 (MQ=255) tcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTg < 1:2431235‑M2/88‑1 (MQ=255) tcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTg < 1:3698796‑M2/88‑1 (MQ=255) aTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTggg > 1:225561‑M2/2‑91 (MQ=255) aTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTggg < 1:3988499‑M2/90‑1 (MQ=255) aTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTggg < 1:1237529‑M2/90‑1 (MQ=255) | CATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTGGG > USA300TCH1516_ALE/2141577‑2141755 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |