BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2141638 =	78 (0.790)	7 (0.080)	6/148	NT	10.3%	coding (450/1617 nt)	groL	60 kDa chaperonin
*	?	USA300TCH1516_ALE	2141666 =	50 (0.550)	7 (0.080)	6/148	NT	10.3%	coding (422/1617 nt)	groL	60 kDa chaperonin

Only 100 of 104 total aligned reads displayed.

TCCATTTGATTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGC  >  USA300TCH1516_ALE/2141548‑2141724

tCCATTTGATTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATctgctgct                                                                                        <  1:1179087/91‑1 (MQ=255)

cccagttggtttacgacaaggtatcgacaaagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaat                                                                                        <  1:3988499‑M1/1‑1 (MQ=255)

cccagttggtttacgacaaggtatcgacaaagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaat                                                                                        >  1:225561‑M1/91‑91 (MQ=255)

cccagttggtttacgacaaggtatcgacaaagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaat                                                                                        <  1:1237529‑M1/1‑1 (MQ=255)

 ccATTTGATTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATctgctgctg                                                                                       <  1:380432/91‑1 (MQ=255)

 ccATTTGATTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATctgctgctg                                                                                       <  1:380405/91‑1 (MQ=255)

 ccATTTGATTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATctgctgctg                                                                                       <  1:379955/91‑1 (MQ=255)

  cagttggtttacgacaaggtatcgacaaagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGa                                                                                      <  1:1979057‑M1/3‑1 (MQ=255)

  cagttggtttacgacaaggtatcgacaaagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGa                                                                                      <  1:1979086‑M1/3‑1 (MQ=255)

  cagttggtttacgacaaggtatcgacaaagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGa                                                                                      <  1:3698796‑M1/3‑1 (MQ=255)

  cagttggtttacgacaaggtatcgacaaagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGa                                                                                      <  1:2431235‑M1/3‑1 (MQ=255)

   aTTTGATTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGaa                                                                                     >  1:1167076/1‑91 (MQ=255)

    tttGATTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGaaa                                                                                    >  1:1482601/1‑91 (MQ=255)

    tttGATTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGaaa                                                                                    >  1:885996/1‑91 (MQ=255)

    gttggtttacgacaaggtatcgacaaagcagttaaagatgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGaaa                                                                                    <  1:3497597‑M1/5‑1 (MQ=255)

     ttggtttacgacaaggtatcgacaaagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAAt                                                                                   >  1:3693667‑M1/86‑91 (MQ=255)

     ttggtttacgacaaggtatcgacaaagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAAt                                                                                   <  1:1103773‑M1/6‑1 (MQ=255)

     ttGATTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAA‑ATAACGTCCAATTTCTTCATCTGCTGCTGAAATc                                                                                  >  1:2720231/1‑91 (MQ=255)

       gATTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCg                                                                                 <  1:2382164/91‑1 (MQ=255)

        aTTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGc                                                                                <  1:1985053/91‑1 (MQ=255)

         ttcttcAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCa                                                                               <  1:1054215/91‑1 (MQ=255)

         ttcttcAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCa                                                                               <  1:1583089/91‑1 (MQ=255)

         ttcttcAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCa                                                                               <  1:1163629/91‑1 (MQ=255)

           cttcAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCAcc                                                                             >  1:1198005/1‑91 (MQ=255)

           cttcAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCAcc                                                                             <  1:3821527/91‑1 (MQ=255)

           cttcAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCAcc                                                                             >  1:2503308/1‑91 (MQ=255)

            ttcAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCt                                                                            >  1:1753115/1‑91 (MQ=255)

            ttcAATTGTAATGACACCATCGTTACCTACCTTTTCCATAGCTTCAGAAATATAACGTCCAATTCCTTCATCTGCTGCTGAAATCGCACCt                                                                            >  1:1753051/1‑91 (MQ=255)

             tcAATTGTAATGACACCATCGTTACCTACGTTTTCCATAGCTTCAAAAATCTAACGCCCCATTGCTTCATATGCTGCTGAAATAGAACCtc                                                                           >  1:1759271/1‑90 (MQ=255)

              cAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTAc                                                                          <  1:469909/91‑1 (MQ=255)

              cAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTAc                                                                          >  1:2655790/1‑91 (MQ=255)

               aaTTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACt                                                                         >  1:2464448/1‑91 (MQ=255)

               aaTTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACt                                                                         >  1:764167/1‑91 (MQ=255)

               aaTTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACt                                                                         >  1:764388/1‑91 (MQ=255)

                 ttGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGACATCGCACCTACTTg                                                                       >  1:12639/1‑91 (MQ=255)

                 ttGTAATGACACCATCGTTACCTACGGTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTg                                                                       <  1:55887/91‑1 (MQ=255)

                  tGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTgc                                                                      <  1:2249594/91‑1 (MQ=255)

                    tAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTgcgc                                                                    >  1:1255807/1‑91 (MQ=255)

                     aaTGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCa                                                                   >  1:698600/1‑91 (MQ=255)

                        gACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATGACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAAtt                                                                >  1:3588497/1‑91 (MQ=255)

                        gACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAAtt                                                                >  1:1094175/1‑91 (MQ=255)

                         gacaaagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCAAttt                                                               >  1:2318862‑M1/66‑91 (MQ=255)

                          cacCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTc                                                              >  1:3637906/1‑91 (MQ=255)

                          cacCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTc                                                              >  1:1625543/1‑91 (MQ=255)

                          cacCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTc                                                              <  1:1090295/91‑1 (MQ=255)

                           acCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCa                                                             >  1:623238/1‑91 (MQ=255)

                           acCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCa                                                             >  1:587718/1‑91 (MQ=255)

                           acCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCa                                                             >  1:623262/1‑91 (MQ=255)

                             cATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtt                                                           <  1:564711/91‑1 (MQ=255)

                             cATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtt                                                           <  1:2074830/91‑1 (MQ=255)

                             cATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtt                                                           <  1:2606439/91‑1 (MQ=255)

                             aagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCAATTTCAtt                                                           >  1:690533‑M1/62‑91 (MQ=255)

                              aTCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAttt                                                          >  1:2699173/1‑91 (MQ=255)

                               tCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtttt                                                         >  1:4003869/1‑91 (MQ=255)

                               gcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCAATTTCAtttt                                                         >  1:1150489‑M1/60‑91 (MQ=255)

                               gcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCAATTTCAtttt                                                         >  1:3212852‑M1/60‑91 (MQ=255)

                                cGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAttttt                                                        >  1:599311/1‑91 (MQ=255)

                                 agttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCAATTTCATTTTTa                                                       >  1:833654‑M1/58‑91 (MQ=255)

                                     ccTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTAtttt                                                   <  1:298613/91‑1 (MQ=255)

                                      cTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTc                                                  <  1:2991900/91‑1 (MQ=255)

                                      cTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTc                                                  >  1:2154583/1‑91 (MQ=255)

                                      aagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTc                                                  >  1:1609148‑M1/53‑91 (MQ=255)

                                            tttCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACttt                                            >  1:306900/1‑91 (MQ=255)

                                              tCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACttttt                                          <  1:2833734/91‑1 (MQ=255)

                                               ccATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTg                                         >  1:2918032/1‑91 (MQ=255)

                                                cATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTga                                        >  1:1114021/1‑91 (MQ=255)

                                                 aTAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgag                                       >  1:2403016/1‑91 (MQ=255)

                                                 aTAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgag                                       <  1:4884/91‑1 (MQ=255)

                                                 aTAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgag                                       <  1:3800088/91‑1 (MQ=255)

                                                 aTAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgag                                       <  1:2841849/91‑1 (MQ=255)

                                                 aTAGCCTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgag                                       >  1:1246838/1‑91 (MQ=255)

                                                  tAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgaga                                      >  1:1697933/1‑91 (MQ=255)

                                                  tAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgaga                                      >  1:1698070/1‑91 (MQ=255)

                                                   aGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGaa                                     >  1:704230/1‑91 (MQ=255)

                                                   aGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGaa                                     >  1:1484749/1‑91 (MQ=255)

                                                    gCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAAt                                    >  1:142293/1‑91 (MQ=255)

                                                    gCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAAt                                    >  1:3796630/1‑91 (MQ=255)

                                                     cTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAAtt                                   >  1:3843074/1‑91 (MQ=255)

                                                           aaaTATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATg                             <  1:580624/91‑1 (MQ=255)

                                                            aaTATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGt                            >  1:780717/1‑91 (MQ=255)

                                                            aaTATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGt                            >  1:780778/1‑91 (MQ=255)

                                                            aaTATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATATTCAACTTTTTGAGAATTTTCATGt                            >  1:3865837/1‑91 (MQ=255)

                                                             atatAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTa                           <  1:2392707/91‑1 (MQ=255)

                                                             atatAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTa                           <  1:1791205/91‑1 (MQ=255)

                                                             atatAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTa                           <  1:1791480/91‑1 (MQ=255)

                                                             atatAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTa                           <  1:151947/91‑1 (MQ=255)

                                                               ataACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAAc                         <  1:281865/91‑1 (MQ=255)

                                                                taACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACg                        >  1:456532/1‑91 (MQ=255)

                                                                  aCGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCt                      >  1:573459/1‑91 (MQ=255)

                                                                      ccAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCaa                  <  1:475911/91‑1 (MQ=255)

                                                                       cAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAAc                 >  1:566237/1‑91 (MQ=255)

                                                                          tttCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGc              >  1:3031650/1‑91 (MQ=255)

                                                                          tttCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGc              <  1:594089/91‑1 (MQ=255)

                                                                               tcATCTGCTGCTGAAATCGCGCCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACtt         >  1:3666644/1‑91 (MQ=255)

                                                                                cATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACttt        >  1:1476177/1‑91 (MQ=255)

                                                                                 aTCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTa       >  1:10243/1‑91 (MQ=255)

                                                                                  tCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTaa      <  1:2434393/91‑1 (MQ=255)

                                                                                  tCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTaa      <  1:2586470/91‑1 (MQ=255)

                                                                                  tCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTaa      <  1:2991971/91‑1 (MQ=255)

                                                                                      ctgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGc  <  1:2472720/91‑1 (MQ=255)

TCCATTTGATTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGC  >  USA300TCH1516_ALE/2141548‑2141724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.