| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2143383 | 72 (0.730) | 11 (0.140) | 8/132 | NT | 15.1% | intergenic (+18/+7) | USA300HOU_RS10935/USA300HOU_RS10940 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2143399 | 64 (0.790) | coding (1245/1254 nt) | USA300HOU_RS10940 | hypothetical protein | |||||
TCGTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2143280‑2143383‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacgaatcacaGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTTTTTCA < USA300TCH1516_ALE/2143399‑2143313 TCGTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATCTATCACATTTTTCTCCCATAATAAAA > 1:1324086/1‑91TCGTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAA < 1:546600/91‑1TCGTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAA < 1:3625130/91‑1TCGTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAA < 1:2935650/91‑1TCGTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAA < 1:1508003/91‑1TCGTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAA < 1:1916754/91‑1 CGTTATATTCCAGTTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAA > 1:3196528/1‑91 GTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAA > 1:914565/1‑91 TTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAA < 1:2824686/91‑1 TCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAAT < 1:1156357/91‑1 TCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAAT > 1:3518391/1‑91 TCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAAT > 1:2494401/1‑91 TCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAAT > 1:2490929/1‑91 CAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCA > 1:2104686/1‑91 CAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCA > 1:3043571/1‑91 CAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCA > 1:1035759/1‑91 GCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAGCGACGATAATCCGTG < 1:3301341/91‑1 TTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAGAAAAAACGAATCACAGCGACGATAATCCGTGTGT < 1:2835221/91‑1 TTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAGCGACGATAATCCGTGTGT < 1:840872/91‑1 AAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACGGCGACGATAATCCGTGTGTGAT < 1:1377112/91‑1 AAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAGCGACGATAATCCGTGTGTGATT < 1:58717/91‑1 AAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAGCGACGATAATCCGTGTGTGATT < 1:2268948/91‑1 AAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCG < 1:2165664/91‑1 AAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGT < 1:3123289/91‑1 AGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTT < 1:679058/91‑1 AGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTT < 1:679120/91‑1 GAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTA < 1:1200454/91‑1 AAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTG < 1:2800528/91‑1 AAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTG < 1:2800737/91‑1 AAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGG > 1:2683965/1‑91 AAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGG > 1:625419/1‑91 AAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGG < 1:390218/91‑1 AAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATACATAAAATTCGCTTGTTCCGTGG < 1:1533260/91‑1 AAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGC < 1:118473/91‑1 AAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGC > 1:62798/1‑91 AAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGC > 1:3093002/1‑91 AAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGC > 1:2126289/1‑91 AACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCT > 1:263912/1‑91 AACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCT > 1:2271832/1‑91 ACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTT > 1:1793521/1‑91 CGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTT < 1:3509920/91‑1 CGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTT < 1:287435/91‑1 CGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTT > 1:3703423/1‑91 CGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTT < 1:2810505/91‑1 CGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTT > 1:2282985/1‑91 ATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTGCGTGGCTTTgaa < 1:3184876/91‑4 ATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTTgaa < 1:1164398/91‑4 ATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTTgaa < 1:307622/91‑4 ATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTTgaa < 1:2154945/91‑4 ATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTTgaa < 1:284104/91‑4 ATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTTTTT > 1:412711/1‑91 TCACAGCGCCGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTTgaaa < 1:3454527/91‑5 TCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTTgaaa < 1:3436017/91‑5 TCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTTgaaa < 1:2366854/91‑5 TCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTTgaaa < 1:3962576/91‑5 TCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTTgaaa < 1:1578038/91‑5 TCACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTTTTTC < 1:2608858/91‑1 CACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTTTTTCA < 1:3142709/91‑1 CACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTTTTTCA < 1:2690399/91‑1 CACAGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTTTTTCA < 1:1588319/91‑1 TCGTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2143280‑2143383‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacgaatcacaGCGACGATAATCCGTGTGTGATTCGTTTTTTTTATTATGGAATAAAAATGTGATATATAAAATTCGCTTGTTCCGTGGCTTTTTTCA < USA300TCH1516_ALE/2143399‑2143313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |