| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2143383 | 72 (0.730) | 11 (0.140) | 8/132 | NT | 15.1% | intergenic (+18/+7) | USA300HOU_RS10935/USA300HOU_RS10940 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2143399 | 64 (0.790) | coding (1245/1254 nt) | USA300HOU_RS10940 | hypothetical protein | |||||
Only 100 of 203 total aligned reads displayed.
TTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCAT > USA300TCH1516_ALE/2143294‑2143473 | ttACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATcacac > 1:1869563/1‑91 (MQ=255) tACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATcacaca < 1:1343581/91‑1 (MQ=255) aCTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTGTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCacacac < 1:2550152/91‑1 (MQ=255) cTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACg > 1:2013871/1‑91 (MQ=255) tAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTATATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGa > 1:3594399/1‑91 (MQ=255) aaTCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGAt > 1:2594518/1‑91 (MQ=255) aaTCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGAt > 1:1551004/1‑91 (MQ=255) gtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGAtt > 1:650927‑M1/70‑91 (MQ=255) aTCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGAtt > 1:735993/1‑91 (MQ=255) aTCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGAtt > 1:140948/1‑91 (MQ=255) cTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTAtc < 1:230333/91‑1 (MQ=255) gAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTAtcgt > 1:854334/1‑91 (MQ=255) gAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTAtcgt > 1:677070/1‑91 (MQ=255) gAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTAtcgt > 1:3107837/1‑91 (MQ=255) ggCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTAtcgtcg > 1:1162470/1‑91 (MQ=255) ctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTAtcgtcg > 1:1208770‑M1/63‑91 (MQ=255) gCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGc > 1:2908840/1‑91 (MQ=255) gatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCtgt > 1:2831491‑M1/59‑91 (MQ=255) tGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtg < 1:1588319‑M2/91‑5 (MQ=255) tGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtg < 1:3142709‑M2/91‑5 (MQ=255) tttcaaagccaCGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtga < 1:1578038‑M2/87‑6 (MQ=255) tttcaaagccaCGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtga < 1:3962576‑M2/87‑6 (MQ=255) gAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtga < 1:2608858‑M2/91‑6 (MQ=255) ttcaaagccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgat < 1:284104‑M2/88‑7 (MQ=255) ttcaaagccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgat < 1:1164398‑M2/88‑7 (MQ=255) ttcaaagccACGCAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgat < 1:3184876‑M2/88‑7 (MQ=255) aaaaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACGgcgacgataatccgtgtgtgat < 1:1377112‑M1/91‑23 (MQ=255) aaaaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgat > 1:412711‑M2/1‑85 (MQ=255) gtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATGGTCGCTGTGAtt > 1:3194639‑M1/55‑91 (MQ=255) gtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaagAAAAACGAATCACACACGGATTATCGTCGCTGTGAtt > 1:3505374‑M1/55‑91 (MQ=255) ggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCg > 1:1455767‑M1/53‑91 (MQ=255) aaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAgcgacgataatccgtgtgtgattcg < 1:2165664‑M1/91‑26 (MQ=255) aaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcg < 1:3509920‑M2/91‑10 (MQ=255) aaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcg < 1:287435‑M2/91‑10 (MQ=255) aaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgt > 1:1793521‑M2/1‑81 (MQ=255) aGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAgcgacgataatccgtgtgtgattcgtt < 1:679120‑M1/91‑28 (MQ=255) aGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAgcgacgataatccgtgtgtgattcgtt < 1:679058‑M1/91‑28 (MQ=255) aGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgtt > 1:2271832‑M2/1‑80 (MQ=255) aGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgtt > 1:263912‑M2/1‑80 (MQ=255) gCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgttt < 1:118473‑M2/91‑13 (MQ=255) ccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgtttt > 1:2683965‑M2/1‑78 (MQ=255) cACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgttttt < 1:2800528‑M2/91‑15 (MQ=255) cACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgttttt < 1:2800737‑M2/91‑15 (MQ=255) aCGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTa < 1:2169879/91‑1 (MQ=255) gAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAATAAAAACGAATCACAgcgacgataatccgtgtgtgattcgtttttttta < 1:1200454‑M1/91‑35 (MQ=255) atcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAtttt > 1:1554781‑M1/43‑91 (MQ=255) aaCAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAtttt < 1:567237/91‑1 (MQ=255) gCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCttt < 1:3572983/91‑1 (MQ=255) cGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCtttt > 1:914566/1‑91 (MQ=255) aaTTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTa < 1:2570010/91‑1 (MQ=255) aaTTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTa < 1:633237/91‑1 (MQ=255) aTTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAt < 1:3136278/91‑1 (MQ=255) ttttATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAtt < 1:2268588/91‑1 (MQ=255) ttttATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAtt < 1:518048/91‑1 (MQ=255) ttATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTc > 1:2712130/1‑91 (MQ=255) atatatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGc > 1:3713362/1‑91 (MQ=255) tatatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCt > 1:2494238/1‑91 (MQ=255) tatatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCt > 1:2802586/1‑91 (MQ=255) atatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCtt < 1:1021486/91‑1 (MQ=255) atatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTATTATTTCGCtt > 1:3760196/1‑91 (MQ=255) acaTTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACaa > 1:684862/1‑91 (MQ=255) acaTTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACaa < 1:4058489/91‑1 (MQ=255) caTTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACaaa < 1:3065877/91‑1 (MQ=255) ccATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGc > 1:2982946/1‑91 (MQ=255) ccATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGc > 1:3635015/1‑91 (MQ=255) ataataAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCAt > 1:806649/1‑91 (MQ=255) ataataAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCAt > 1:3952923/1‑91 (MQ=255) aaataaAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATg < 1:2170432/90‑1 (MQ=255) aaaaaaaCGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGACTAGCATGATTGa < 1:3182792/91‑1 (MQ=255) aaaaaaaCGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGa < 1:1272306/91‑1 (MQ=255) aaaaaaCGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaa > 1:715102/1‑91 (MQ=255) aaaaCGAATCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtgg < 1:390218‑M1/91‑79 (MQ=255) aaaaCGAATCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtgg > 1:625419‑M1/1‑13 (MQ=255) aaaaCGAATCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatacataaaattcgcttgttccgtgg < 1:1533260‑M1/91‑79 (MQ=255) aaaCGAATCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggc > 1:2126289‑M1/1‑12 (MQ=255) aaaCGAATCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggc > 1:62798‑M1/1‑12 (MQ=255) aaaCGAATCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggc > 1:3093002‑M1/1‑12 (MQ=255) AAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACACTTAAGAATAGCATGATTGAAAAt < 1:1545117‑M1/91‑1 (MQ=255) AAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAAt > 1:2276661‑M1/1‑91 (MQ=255) AACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATa > 1:223309‑M1/1‑91 (MQ=255) aCGAATCACACACGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggctt < 1:3123289‑M2/91‑66 (MQ=255) cGAATCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttt < 1:2810505‑M1/91‑83 (MQ=255) cGAATCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttt > 1:2282985‑M1/1‑9 (MQ=255) cGAATCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttt > 1:3703423‑M1/1‑9 (MQ=255) CGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacc > 1:1767904‑M1/1‑91 (MQ=255) GAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacca < 1:3822943‑M1/91‑1 (MQ=255) aaTCACACACGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttt < 1:58717‑M2/91‑69 (MQ=255) aaTCACACACGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttt < 1:2268948‑M2/91‑69 (MQ=255) aTCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggctttgaa < 1:307622‑M1/91‑86 (MQ=255) aTCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggctttgaa < 1:2154945‑M1/91‑86 (MQ=255) ATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATaccacc > 1:584631‑M1/1‑91 (MQ=255) tCACAgcgccgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggctttgaaa < 1:3454527‑M1/91‑87 (MQ=255) tCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggctttgaaa < 1:3436017‑M1/91‑87 (MQ=255) TCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATAccacca > 1:1384726‑M1/1‑91 (MQ=255) TCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATAccacca > 1:3448040‑M1/1‑91 (MQ=255) cacagcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttca < 1:2690399‑M1/91‑88 (MQ=255) acacacGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttcaa < 1:840872‑M2/91‑73 (MQ=255) acacacGGATTATCGTCGCtgtgattcgttttttctattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttcaa < 1:2835221‑M2/91‑73 (MQ=255) ACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatc < 1:4088449‑M1/91‑1 (MQ=255) ACACGGATTATCGTCGCTGTGATTCGTTTTTATCTTTGTTTTTATTGCGCTTTACAAATCAGAATAGCATGATTGAAAATACCACcatcat < 1:3309176‑M1/91‑1 (MQ=255) | TTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCAT > USA300TCH1516_ALE/2143294‑2143473 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |