BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2143383	72 (0.730)	11 (0.140)	8/132	NT	15.1%	intergenic (+18/+7)	USA300HOU_RS10935/USA300HOU_RS10940	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2143399	64 (0.790)	11 (0.140)	8/132	NT	15.1%	coding (1245/1254 nt)	USA300HOU_RS10940	hypothetical protein

Only 100 of 148 total aligned reads displayed.

GCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATT  >  USA300TCH1516_ALE/2143309‑2143486

gCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGc                                                                                         >  1:2908840/1‑91 (MQ=255)

  atgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCt                                                                                        >  1:93452‑M1/61‑91 (MQ=255)

    tGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtg                                                                                     <  1:3142709‑M2/91‑5 (MQ=255)

    tGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtg                                                                                     <  1:2690399‑M2/91‑5 (MQ=255)

    gatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCtgt                                                                                      >  1:3845122‑M1/59‑91 (MQ=255)

     tttcaaagccaCGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtga                                                                                    <  1:3436017‑M2/87‑6 (MQ=255)

     tttcaaagccaCGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtga                                                                                    <  1:2366854‑M2/87‑6 (MQ=255)

     tttcaaagccaCGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtga                                                                                    <  1:1578038‑M2/87‑6 (MQ=255)

     tttcaaagccaCGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGGCGCtgtga                                                                                    <  1:3454527‑M2/87‑6 (MQ=255)

      ttcaaagccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtgat                                                                                   <  1:1164398‑M2/88‑7 (MQ=255)

      ttcaaagccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtgat                                                                                   <  1:307622‑M2/88‑7 (MQ=255)

      ttcaaagccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtgat                                                                                   <  1:284104‑M2/88‑7 (MQ=255)

      ttcaaagccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtgat                                                                                   <  1:2154945‑M2/88‑7 (MQ=255)

      ttcaaagccACGCAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtgat                                                                                   <  1:3184876‑M2/88‑7 (MQ=255)

      aaaaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtgat                                                                                   >  1:412711‑M2/1‑85 (MQ=255)

        gtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCTGTGAtt                                                                                  >  1:3194227‑M1/55‑91 (MQ=255)

        gtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaagAAAAACGAATCACACACGGATTATCGTCGCTGTGAtt                                                                                  >  1:3505374‑M1/55‑91 (MQ=255)

         aaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcg                                                                                <  1:2810505‑M2/91‑10 (MQ=255)

         aaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcg                                                                                >  1:3703423‑M2/1‑82 (MQ=255)

         aaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcg                                                                                <  1:3509920‑M2/91‑10 (MQ=255)

          ggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCg                                                                                >  1:2898737‑M1/53‑91 (MQ=255)

          aaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgt                                                                               >  1:1793521‑M2/1‑81 (MQ=255)

           aGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgtt                                                                              >  1:263912‑M2/1‑80 (MQ=255)

           aGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgtt                                                                              >  1:2271832‑M2/1‑80 (MQ=255)

            gCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgttt                                                                             >  1:62798‑M2/1‑79 (MQ=255)

            gCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgttt                                                                             >  1:2126289‑M2/1‑79 (MQ=255)

            gCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgttt                                                                             <  1:118473‑M2/91‑13 (MQ=255)

             ccACGGAACAAGCGAATTTTATGTATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgtttt                                                                            <  1:1533260‑M2/91‑14 (MQ=255)

             ccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgtttt                                                                            >  1:625419‑M2/1‑78 (MQ=255)

             ccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgtttt                                                                            >  1:2683965‑M2/1‑78 (MQ=255)

             ccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgtttt                                                                            <  1:390218‑M2/91‑14 (MQ=255)

              cACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgttttt                                                                           <  1:2800737‑M2/91‑15 (MQ=255)

               aCGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTa                                                                          <  1:2169879/91‑1 (MQ=255)

               aCGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTa                                                                          >  1:2509849/1‑91 (MQ=255)

                 ggAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAtt                                                                        <  1:1551867/91‑1 (MQ=255)

                   aaCAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAtttt                                                                      <  1:567237/91‑1 (MQ=255)

                    aCAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAttttt                                                                     <  1:1518823/91‑1 (MQ=255)

                    aCAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAttttt                                                                     <  1:3585217/91‑1 (MQ=255)

                     cAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTc                                                                    <  1:704575/91‑1 (MQ=255)

                       aGCGAATTTTATATATCACATTTTTATTCCATAAT‑‑AAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCttt                                                                 <  1:2801073/91‑1 (MQ=255)

                        gCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCttt                                                                 <  1:3572983/91‑1 (MQ=255)

                         cGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCtttt                                                                >  1:914566/1‑91 (MQ=255)

                           aaTTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTa                                                              <  1:2570010/91‑1 (MQ=255)

                           aaTTTTATATATAACATTTTTATTCCATAAT‑‑AAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAt                                                             >  1:3172765/1‑91 (MQ=255)

                            aTTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAt                                                             <  1:3136277/91‑1 (MQ=255)

                            aTTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAt                                                             >  1:549164/1‑91 (MQ=255)

                            aTTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAt                                                             >  1:2188754/1‑91 (MQ=255)

                             ttttATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAtt                                                            <  1:2268588/91‑1 (MQ=255)

                               ttATATATCACATTTTTATTCCATAATAAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAttt                                                           <  1:2583096/91‑1 (MQ=255)

                               ttATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTc                                                          >  1:2712130/1‑91 (MQ=255)

                                tatataTCACATTTTTATTCCATAAT‑‑AAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGc                                                        <  1:136165/91‑1 (MQ=255)

                                 atatatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGc                                                        >  1:3713362/1‑91 (MQ=255)

                                   atatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCtt                                                      >  1:843091/1‑91 (MQ=255)

                                   atatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCtt                                                      <  1:1021486/91‑1 (MQ=255)

                                   atatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTATTATTTCGCtt                                                      >  1:3760196/1‑91 (MQ=255)

                                      tCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTATATTTCGCTTTAc                                                   >  1:4142143/1‑91 (MQ=255)

                                        acaTTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACaa                                                 <  1:4058489/91‑1 (MQ=255)

                                         caTTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACaaa                                                <  1:3065910/91‑1 (MQ=255)

                                         caTTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACaaa                                                <  1:3065877/91‑1 (MQ=255)

                                                aTTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAAt                                         <  1:3780882/91‑1 (MQ=255)

                                                 ttCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATa                                        >  1:3450251/1‑91 (MQ=255)

                                                   ccATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGc                                      >  1:3635015/1‑91 (MQ=255)

                                                   ccATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGc                                      >  1:2982946/1‑91 (MQ=255)

                                                     ataat‑aAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCAt                                    >  1:806649/1‑91 (MQ=255)

                                                     ataat‑aAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCAt                                    >  1:3952923/1‑91 (MQ=255)

                                                      aaat‑aaAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATg                                   <  1:2170323/90‑1 (MQ=255)

                                                         t‑aaAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgtttttattattatggaataaaaatgtgatatataaaattcgcttgttc                                <  1:1200454‑M2/91‑58 (MQ=255)

                                                            aaaaaaaCGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGa                              <  1:1272306/91‑1 (MQ=255)

                                                             aaaaaaCGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaa                             >  1:715102/1‑91 (MQ=255)

                                                               AAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaaa                           >  1:875695‑M1/1‑91 (MQ=255)

                                                               AAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaaa                           <  1:2279234‑M1/91‑1 (MQ=255)

                                                                AAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAAt                          <  1:1545217‑M1/91‑1 (MQ=255)

                                                                AAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAAt                          >  1:1625227‑M1/1‑91 (MQ=255)

                                                                AAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAAt                          >  1:2276661‑M1/1‑91 (MQ=255)

                                                                 aaCGAATCACACACGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggct                         <  1:679058‑M2/91‑65 (MQ=255)

                                                                 aaCGAATCACACACGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggct                         <  1:679120‑M2/91‑65 (MQ=255)

                                                                 AACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATa                         >  1:223309‑M1/1‑91 (MQ=255)

                                                                  aCGAATCACACACGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggctt                        <  1:3123289‑M2/91‑66 (MQ=255)

                                                                  ACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATac                        >  1:1438472‑M1/1‑91 (MQ=255)

                                                                   CGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacc                       <  1:2808844‑M1/91‑1 (MQ=255)

                                                                   CGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacc                       >  1:1767904‑M1/1‑91 (MQ=255)

                                                                     aaTCACACACGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttt                     <  1:58717‑M2/91‑69 (MQ=255)

                                                                     aaTCACACACGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttt                     <  1:2268948‑M2/91‑69 (MQ=255)

                                                                      aTCACACACGGATTATCGTCGCcgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggctttttt                    <  1:1377112‑M2/91‑70 (MQ=255)

                                                                      ATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATaccacc                    >  1:584631‑M1/1‑91 (MQ=255)

                                                                      ATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATaccacc                    >  1:1400834‑M1/1‑91 (MQ=255)

                                                                        CACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcat                  <  1:3652171‑M1/91‑1 (MQ=255)

                                                                         acacacGGATTATCGTCGCtgtgattcgttttttctattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttcaa                 <  1:2835221‑M2/91‑73 (MQ=255)

                                                                         ACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatc                 <  1:4088395‑M1/91‑1 (MQ=255)

                                                                            cacGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttcaaagc              <  1:3301341‑M2/91‑76 (MQ=255)

                                                                              cGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGa            >  1:4014806/1‑91 (MQ=255)

                                                                              cGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGa            <  1:2530207/91‑1 (MQ=255)

                                                                              cGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGa            <  1:805916/91‑1 (MQ=255)

                                                                              cGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGa            >  1:319523/1‑91 (MQ=255)

                                                                               ggATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGaa           <  1:2934182/91‑1 (MQ=255)

                                                                                gATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAAc          <  1:1630837/91‑1 (MQ=255)

                                                                                  ttATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACAt        >  1:4010159/1‑91 (MQ=255)

                                                                                  ttATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACAt        >  1:1588218/1‑91 (MQ=255)

                                                                                     tcgtcgCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTATAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACa     <  1:3311885/91‑1 (MQ=255)

                                                                                        tcgCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAAtt  <  1:2344097/91‑1 (MQ=255)

GCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATT  >  USA300TCH1516_ALE/2143309‑2143486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.