| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2160387 | 92 (0.940) | 9 (0.110) | 8/136 | NT | 10.0% | intergenic (+20/‑341) | yheS/mutS_2 | putative ABC transporter ATP‑binding protein YheS/DNA mismatch repair protein MutS |
| ? | USA300TCH1516_ALE | = 2160400 | 83 (0.990) | intergenic (+33/‑328) | yheS/mutS_2 | putative ABC transporter ATP‑binding protein YheS/DNA mismatch repair protein MutS | |||||
ATTAGCTATCCAAAAACAAGATAGCGAACAAAAATTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2160286‑2160387‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataactctaactATAGCGATTTTACAGTTAGAGTTATGTATATTTTTATAGTTTTTGTTGTAATTCTTCCCATTTAGACATAGCGTGTTCTAATTTTTGTT < USA300TCH1516_ALE/2160400‑2160312 ATTAGCTATCCAAAAACAAGATAGCGAACAAAAATTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACA < 1:1691532/91‑1ATTAGCTATCCAAAAACAAGATAGCGAACAAAAATTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACA < 1:4021035/91‑1 TAGCTATCCAAAAACAAGATAGCGAACAAAAATTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATA > 1:3463214/1‑91 AGCTATGCAAAAACAAGATAGCGAACAAAAATTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAA > 1:3232515/1‑91 AGCTATCCAAAAACAAGATAGCGAACAAAAATTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAA > 1:782708/1‑91 AGCTATCCAAAAACAAGATAGCGAACAAAAATTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAA < 1:3612036/91‑1 AGCTATCCAAAAACAAGATAGCGAACAAAAATTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAA > 1:3118430/1‑91 GCTATCCAAAAACAAGATAGCGAACAAAAATTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAAC < 1:520247/91‑1 ATCCAAAAACAAGATAGCGAACAAAAATTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCT < 1:3510583/91‑1 ATCCAAAAACAAGATAGCGAACAAAAATTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCT > 1:2498142/1‑91 ATCCAAAAACAAGATAGCGAACAAAAATTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCT > 1:2502310/1‑91 GCGAACAGAAATTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTATAGCGATTTTA < 1:2069701/91‑1 ACAAAAATTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTATAGCGATTTTACAGT < 1:1021939/91‑1 AAAATTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTATAGCGATTTTACAGTTAG < 1:269556/91‑1 ATTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTATAGCGATTTTACAGTTAGAGT < 1:2447177/91‑1 AACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTATAGCGATTTTACAGTTAGAGTTATGT < 1:804831/91‑1 CACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTATAGCGATTTTACAGTTAGAGTTATGTAT < 1:787354/91‑1 CTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTATAGCGATTTTACAGTTAGAGTTATGTATATTT < 1:1890519/91‑1 CTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTATAGCGATTTTACAGTTAGAGTTATGTATATTT < 1:1890402/91‑1 AATGGGAAGAATTACAACAAAAACTATAAAAA‑‑‑A‑ATAACTCTAACTATAGCGATTTTACAGTTAGAGTTATGTATATTTTTATAGTTTTTGT < 1:338447/91‑1 TAACTCTAACTATAGCGATTTTACAGTTAGAGTTATGTATATTTTTATAGTTTTTGTTGTAATTCTTCCCATTTAGACATAGCGTGTTCTA > 1:1638991/1‑91 AACTCTAACTATAGCGATTTTACAGTTAGAGTTATGTATATTTTTATAGTTTTTGTTGTAATTCTTCCCATTTAGACATAGCGTGTTCTAA > 1:2235779/1‑91 AACTCTAACTATAGCGATTTTACAGTTAGAGTTATGTATATTTTTATAGTTTTTGTTGTAATTCTTCCCATTTAGACATAGCGTGTTCTAA > 1:1165017/1‑91 ACTCTAACTATAGCGATTTTACAGTTAGAGTTATGTATATTTTTATAGTTTTTGTTGTAATTCTTCCCATTTAGACATAGCGTGTTCTAAT > 1:4052240/1‑91 CTCTAACTATAGCGATTTTACAGTTAGAGTTATGTATATTTTTATAGTTTTTGTTGTAATTCTTCCCATTTAGACATAGCGTGTTCTAATT > 1:863865/1‑91 CTCTAACTATAGCGATTTTACAGTTAGAGTTATGTATATTTTTATAGTTTTTGTTGTAATTCTTCCCATTTAGACATAGCGTGTTCTAATT > 1:2887380/1‑91 CTCTAACTATAGCGATTTTACAGTTAGAGTTATGTATATTTTTATAGTTTTTGTTGTAATTCTTCCCATTTAGACATAGCGTGTTCTAATT < 1:2545186/91‑1 CTCTAACTATAGCGATTTTACAGTTAGAGTTATGTATATTTTTATAGTTTTTGTTGTAATTCTTCCCATTTAGACATAGCGTGTTCTAATT < 1:2412169/91‑1 CTATAGCGATTTTACAGTTAGAGTTATGTATATTTTTATAGTTTTTGTTGTAATTCTTCCCATTTAGACATAGCGTGTTCTAATTTTTGTT > 1:498090/1‑91 ATTAGCTATCCAAAAACAAGATAGCGAACAAAAATTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2160286‑2160387‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataactctaactATAGCGATTTTACAGTTAGAGTTATGTATATTTTTATAGTTTTTGTTGTAATTCTTCCCATTTAGACATAGCGTGTTCTAATTTTTGTT < USA300TCH1516_ALE/2160400‑2160312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |