BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2160387	92 (0.940)	9 (0.110)	8/136	NT	10.0%	intergenic (+20/‑341)	yheS/mutS_2	putative ABC transporter ATP‑binding protein YheS/DNA mismatch repair protein MutS
*	?	USA300TCH1516_ALE	= 2160400	83 (0.990)	9 (0.110)	8/136	NT	10.0%	intergenic (+33/‑328)	yheS/mutS_2	putative ABC transporter ATP‑binding protein YheS/DNA mismatch repair protein MutS

Only 100 of 119 total aligned reads displayed.

AACAAAAATTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTAC  >  USA300TCH1516_ALE/2160312‑2160489

aaCAAAAATTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATag                                                                                         >  1:498090‑M2/1‑89 (MQ=255)

      aaTTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATagttagag                                                                                   >  1:863865‑M2/1‑83 (MQ=255)

      aaTTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATagttagag                                                                                   >  1:2887380‑M2/1‑83 (MQ=255)

      aaTTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATagttagag                                                                                   <  1:2545186‑M2/91‑9 (MQ=255)

      aaTTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATagttagag                                                                                   <  1:2412169‑M2/91‑9 (MQ=255)

       aTTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATagttagagt                                                                                  >  1:4052240‑M2/1‑82 (MQ=255)

        ttAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATagttagagtt                                                                                 >  1:2235779‑M2/1‑81 (MQ=255)

           gAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAtt                                                                              <  1:3036510/91‑1 (MQ=255)

           gAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAtt                                                                              >  1:851145/1‑91 (MQ=255)

            aaCACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAttt                                                                             >  1:3176338/1‑91 (MQ=255)

            aaCACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAttt                                                                             >  1:3158342/1‑91 (MQ=255)

            aaCACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAttt                                                                             >  1:3157988/1‑91 (MQ=255)

             acacGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAtttt                                                                            >  1:1192911/1‑91 (MQ=255)

             acacGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAtttt                                                                            >  1:1938773/1‑91 (MQ=255)

              cacGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAttttt                                                                           >  1:3186866/1‑91 (MQ=255)

              cacGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAttttt                                                                           <  1:2520065/91‑1 (MQ=255)

              cacGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAttttt                                                                           >  1:3961954/1‑91 (MQ=255)

               acGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAtttttt                                                                          >  1:257617/1‑91 (MQ=255)

                 gCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTa                                                                        >  1:73458/1‑91 (MQ=255)

                  cTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTAc                                                                       <  1:1649158/91‑1 (MQ=255)

                  cTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTAc                                                                       <  1:1191280/91‑1 (MQ=255)

                     tGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACaaa                                                                    <  1:1988499/91‑1 (MQ=255)

                     tGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACaaa                                                                    <  1:1987982/91‑1 (MQ=255)

                       tCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaatt                                                                  >  1:3157743/1‑91 (MQ=255)

                       tCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaatt                                                                  >  1:2257637/1‑91 (MQ=255)

                          aaaTGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaatttta                                                               >  1:1163880/1‑91 (MQ=255)

                           aaTGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattttaa                                                              >  1:223120/1‑91 (MQ=255)

                            aTGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattttaat                                                             >  1:253059/1‑91 (MQ=255)

                            aTGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattttaat                                                             >  1:344395/1‑91 (MQ=255)

                            aTGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattttaat                                                             >  1:2665350/1‑91 (MQ=255)

                              gggAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattttaattt                                                           <  1:2497751/91‑1 (MQ=255)

                                gaagaaTTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAAttttt                                                         >  1:1472128/1‑91 (MQ=255)

                                gaagaaTTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAAttttt                                                         >  1:1472146/1‑91 (MQ=255)

                                 aagaaTTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAAtttttt                                                        <  1:2183269/91‑1 (MQ=255)

                                    aaTTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTAt                                                     >  1:855611/1‑91 (MQ=255)

                                      ttACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTc                                                   <  1:2840801/91‑1 (MQ=255)

                                        acaacaAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTcac                                                 >  1:515577/1‑91 (MQ=255)

                                           acaaAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATagttagagttatttttttatagtttttgttgtaattcttcccatt                                              <  1:338447‑M2/91‑46 (MQ=255)

                                           acaaAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAAt                                              <  1:3989179/91‑1 (MQ=255)

                                           acaaAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAAt                                              >  1:6656/1‑91 (MQ=255)

                                            caaAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATa                                             <  1:864840/91‑1 (MQ=255)

                                            caaAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATa                                             <  1:864921/91‑1 (MQ=255)

                                            caaAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATa                                             >  1:3661509/1‑91 (MQ=255)

                                            caaAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATa                                             <  1:1046333/91‑1 (MQ=255)

                                               aaaCTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATaaaa                                          >  1:1043796/1‑91 (MQ=255)

                                                 aCTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAAc                                        >  1:1603012/1‑91 (MQ=255)

                                                 aCTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAAc                                        <  1:1340760/91‑1 (MQ=255)

                                                 aCTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAAc                                        <  1:271530/91‑1 (MQ=255)

                                                     taAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTg                                    >  1:3378930/1‑91 (MQ=255)

                                                     taAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTg                                    <  1:82098/91‑1 (MQ=255)

                                                     taAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTg                                    >  1:347841/1‑91 (MQ=255)

                                                     taAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTg                                    <  1:2183020/91‑1 (MQ=255)

                                                      aaaaaTATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGa                                   <  1:1723204/91‑1 (MQ=255)

                                                        aaaTATACATAACTCTAACTGTAAAATCGCTATagttagagttatgtatatttttatagtttttgttgtaattcttcccatttagacatag                                 <  1:1890402‑M2/91‑59 (MQ=255)

                                                        aaaTATACATAACTCTAACTGTAAAATCGCTATagttagagttatgtatatttttatagtttttgttgtaattcttcccatttagacatag                                 <  1:1890519‑M2/91‑59 (MQ=255)

                                                        aaaTATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGata                                 >  1:3986755/1‑91 (MQ=255)

                                                        aaaTATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGata                                 <  1:1011389/91‑1 (MQ=255)

                                                          atatACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGAtatt                               <  1:1195864/91‑1 (MQ=255)

                                                          atatACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGAtatt                               <  1:1816264/91‑1 (MQ=255)

                                                           tataCATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGAtatta                              <  1:3250824/91‑1 (MQ=255)

                                                           tataCATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGAtatta                              <  1:1841768/91‑1 (MQ=255)

                                                           tataCATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGAtatta                              <  1:1841755/91‑1 (MQ=255)

                                                            ataCATAACTCTAACTGTAAAATCGCTATagttagagttatgtatatttttatagtttttgttgtaattcttcccatttagacatagcgtg                             <  1:787354‑M2/91‑63 (MQ=255)

                                                            ataCATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGAtattat                             <  1:3996637/91‑1 (MQ=255)

                                                            ataCATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGAtattat                             >  1:2480301/1‑91 (MQ=255)

                                                              aCATAACTCTAACTGTAAAATCGCTATagttagagttatgtatatttttatagtttttgttgtaattcttcccatttagacatagcgtgtt                           <  1:804831‑M2/91‑65 (MQ=255)

                                                              aCATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAg                           <  1:500989/91‑1 (MQ=255)

                                                               cATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGc                          >  1:3038164/1‑91 (MQ=255)

                                                                aTAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCt                         <  1:2876425/91‑1 (MQ=255)

                                                                aTAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCt                         <  1:472413/91‑1 (MQ=255)

                                                                aTAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCt                         <  1:3183450/91‑1 (MQ=255)

                                                                 tAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTa                        >  1:1027562/1‑91 (MQ=255)

                                                                   aCTCTAACTGTAAAATCGCTATagttagagttatgtatatttttatagtttttgttgtaattcttcccatttagacatagcgtgttctaat                      <  1:2447177‑M2/91‑70 (MQ=255)

                                                                   aCTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATc                      <  1:3612792/91‑1 (MQ=255)

                                                                   aCTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATc                      <  1:3613763/91‑1 (MQ=255)

                                                                   aCTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATc                      <  1:3613858/91‑1 (MQ=255)

                                                                   aCTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATc                      <  1:1484807/91‑1 (MQ=255)

                                                                   aCTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATc                      <  1:2846833/91‑1 (MQ=255)

                                                                      ctAACTGTAAAATCGCTATagttagagttatgtatatttttatagtttttgttgtaattcttcccatttagacatagcgtgttctaatttt                   <  1:269556‑M2/91‑73 (MQ=255)

                                                                         aCTGTAAAATCGCTATagttagagttatgtatatttttatagtttttgttgtaattcttcccatttagacatagcgtgttctaatttttgt                <  1:1021939‑M2/91‑76 (MQ=255)

                                                                         aCTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGa                >  1:3816762/1‑91 (MQ=255)

                                                                         aCTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGa                >  1:3816086/1‑91 (MQ=255)

                                                                         aCTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGa                <  1:2638039/91‑1 (MQ=255)

                                                                         aCTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGa                >  1:3816852/1‑91 (MQ=255)

                                                                             tAAAATCGCTATagttagagttatgtatatttttatagtttttgttgtaattcttcccatttagacatagcgtgttctaatttctgttcgc            <  1:2069701‑M2/91‑80 (MQ=255)

                                                                              aaaaTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTAt           <  1:1773283/91‑1 (MQ=255)

                                                                              aaaaTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTAt           >  1:2131879/1‑91 (MQ=255)

                                                                               aaaTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATc          >  1:3769950/1‑91 (MQ=255)

                                                                               aaaTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATc          >  1:3768878/1‑91 (MQ=255)

                                                                               aaaTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATc          >  1:257168/1‑91 (MQ=255)

                                                                                aaTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATcc         <  1:2315871/91‑1 (MQ=255)

                                                                                aaTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATcc         <  1:1260246/91‑1 (MQ=255)

                                                                                aaTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATcc         >  1:1616626/1‑91 (MQ=255)

                                                                                   cGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAg      >  1:1712982/1‑91 (MQ=255)

                                                                                    gCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGt     <  1:697211/91‑1 (MQ=255)

                                                                                    gCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGt     >  1:1694917/1‑91 (MQ=255)

                                                                                    gCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGt     >  1:166214/1‑91 (MQ=255)

                                                                                    gCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGt     <  1:3200854/91‑1 (MQ=255)

                                                                                    gCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGt     >  1:873653/1‑91 (MQ=255)

                                                                                       ataGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTAc  <  1:2681463/91‑1 (MQ=255)

AACAAAAATTAGAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTAC  >  USA300TCH1516_ALE/2160312‑2160489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.