| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2210428 | 75 (0.760) | 9 (0.100) | 5/148 | NT | 10.7% | coding (69/648 nt) | USA300HOU_RS11275 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 2210445 | 81 (0.890) | coding (86/648 nt) | USA300HOU_RS11275 | hypothetical protein | |||||
AATAGAAATATGAGGAGTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2210333‑2210428‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatacaTGCGCAATATCATGGCCTGTATAATCATTTTGATGAATAGATTCCATATATTTTTTGGCAGCACTAATGACGTCTGATTGTTGCATTA < USA300TCH1516_ALE/2210445‑2210358 AATAGAAATATGAGGAGTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATT < 1:3986775/91‑1 ATAGAAATATGAGGAGTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTA < 1:1075483/91‑1 TAGAAATATGAGGAGTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTAT < 1:3465600/91‑1 AGAAATATGAGGAGTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATA > 1:2926296/1‑91 AAATATGAGGAGTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACA > 1:2795947/1‑91 TTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACATGCGCAATATCATGGCCT < 1:1762974/91‑1 TTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACATGCGCAATATCATGGCCT < 1:1762788/91‑1 ATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACATGCGCAATATCATGGCCTGTAT < 1:3020407/91‑1 ATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACATGCGCAATATCATGGCCTGTAT < 1:304109/91‑1 GCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACATGCGCAATATCATGGCCTGTATAA < 1:2102894/91‑1 GCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACATGCGCAATATCATGGCCTGTATAA < 1:2205495/91‑1 GCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACATGCGCAATATCATGGCCTGTATAA < 1:2205549/91‑1 CAACAATCAGACGTCATTAGTGCTGCCAATAGATATATGGAATCGATTCATCAGAATGATTATACATGCGCAATATCATGGCCTGTATAAT < 1:3317437/91‑1 AACAATCATACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACATGCGCAATATCATGGCCTGTATAATC < 1:189540/91‑1 ATACATGCGCAATATCATGGCCTGTATAATCATTTTGATGAATAGATTCCATATATTTTTTGGCAGCACTAATGACGTCTGATTGTTGCAT > 1:3361219/1‑91 ATACATGCGCAATATCATGGCCTGTATAATCATTTTGATGAATAGATTCCATATATTTTTTGGCAGCACTAATGACGTCTGATTGTTGCAT > 1:3361554/1‑91 ATACATGAGCAATATCATGGCCTGTATAATCATTTTGATGAATAGATTCCATATATTTTTTGGCAGCACTAATGACGTCTGATTGTTGCAT < 1:2063078/91‑1 ACATGCGCAATATCATGGCCTGTATAATCATTTTGATGAATAGATTCCATATATTTTTTGGCAGCACTAATGACGTCTGATTGTTGCATTA > 1:3641783/1‑91 AATAGAAATATGAGGAGTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2210333‑2210428‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatacaTGCGCAATATCATGGCCTGTATAATCATTTTGATGAATAGATTCCATATATTTTTTGGCAGCACTAATGACGTCTGATTGTTGCATTA < USA300TCH1516_ALE/2210445‑2210358 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |